bigdatagenomics / adam / 1967
81%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 8
Files 151
Run time 1min
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1967

Pull #1505

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/3f63189c2b0a2640e253abe856924c17b6b39a1c">3f63189c2<a href="https://github.com/bigdatagenomics/adam/commit/3f63189c2b0a2640e253abe856924c17b6b39a1c">">Merge </a><a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/a101db92d48de6e97b6ab1ccbb8e338d4d94fda1">a101db92d</a>">a101db92d</a><a href="https://github.com/bigdatagenomics/adam/commit/3f63189c2b0a2640e253abe856924c17b6b39a1c"> into dbe5c97c3">dbe5c97c3</a>
Pull Request #1505: Adding read, sequence, and slice RDDs

236 of 236 new or added lines in 12 files covered. (100.0%)

5162 of 6316 relevant lines covered (81.73%)

6.53 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
96.97
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
2
77.78
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/ADAM2Fasta.scala
2
11.76
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/CountContigKmers.scala
3
69.7
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/util/ReferenceContigMap.scala
11
77.08
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/sequence/SliceRDD.scala
21
79.3
 1.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
24
54.72
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/sequence/SequenceRDD.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
60.0
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
1
59.46
 -2.7% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/MDTagging.scala
1
98.11
 -1.89% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/FlagStat.scala
1
95.0
 -0.38% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/RealignIndels.scala
1
82.54
 -1.59% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTarget.scala
1
88.24
 -5.88% adam-core/src/main/scala/org/bdgenomics/adam/util/IndexedFastaFile.scala
1
99.2
 0.02% adam-core/src/main/scala/org/bdgenomics/adam/serialization/ADAMKryoRegistrator.scala
1
93.75
 -0.52% adam-core/src/main/scala/org/bdgenomics/adam/models/MdTag.scala
1
96.97
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
1
96.63
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
1
92.23
 0.97% adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
1
85.32
 0.31% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
2
65.38
 -3.85% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
2
61.04
 2.6% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
2
84.31
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/CoverageRDD.scala
2
77.78
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/ADAM2Fasta.scala
2
55.06
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Transform.scala
3
72.22
 -3.7% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
3
69.7
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/util/ReferenceContigMap.scala
4
80.73
 -0.92% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
5
91.09
 3.96% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
10
90.41
 1.37% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
27
81.97
 0.43% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
51
70.05
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
62
79.3
 1.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
Jobs
ID Job ID Ran Files Coverage
1 1967.1 258
81.63
2 1967.2 258
81.65
3 1967.3 258
81.65
4 1967.4 258
81.63
5 1967.5 258
81.6
6 1967.6 258
81.6
7 1967.7 258
81.59
8 1967.8 258
81.59
Source Files on build 1967
Coverage ∆ File Lines Relevant Covered Missed Hits/Line