bigdatagenomics / adam / 1966
81%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 7
Files 151
Run time 40s
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1966

Pull #1505

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/2d80feb1f2e64d393e19005c0b0ca19c3a8c1a22">2d80feb1f<a href="https://github.com/bigdatagenomics/adam/commit/2d80feb1f2e64d393e19005c0b0ca19c3a8c1a22">">Merge </a><a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/6840c63bd12fbc10d0e62aa948a962e4355f0303">6840c63bd</a>">6840c63bd</a><a href="https://github.com/bigdatagenomics/adam/commit/2d80feb1f2e64d393e19005c0b0ca19c3a8c1a22"> into dbe5c97c3">dbe5c97c3</a>
Pull Request #1505: Adding read, sequence, and slice RDDs

215 of 215 new or added lines in 12 files covered. (100.0%)

5157 of 6291 relevant lines covered (81.97%)

5.73 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
96.97
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
2
77.78
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/ADAM2Fasta.scala
2
11.76
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/CountContigKmers.scala
3
69.7
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/util/ReferenceContigMap.scala
7
80.56
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/sequence/SequenceRDD.scala
7
84.09
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/sequence/SliceRDD.scala
21
79.3
 1.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
96.97
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
1
94.27
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/MdTag.scala
1
60.0
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
1
97.78
 -1.11% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ShuffleRegionJoin.scala
1
82.76
 -3.45% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/ReferencePositionPair.scala
1
95.0
 -0.38% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/RealignIndels.scala
1
82.54
 -1.59% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTarget.scala
1
99.2
 0.02% adam-core/src/main/scala/org/bdgenomics/adam/serialization/ADAMKryoRegistrator.scala
1
67.31
 -1.92% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
1
85.32
 0.31% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
1
59.74
 1.3% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
1
86.96
 -4.35% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/Tab6InFormatter.scala
1
77.78
 -5.56% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/InterleavedFASTQInFormatter.scala
2
73.91
 -8.7% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Reads2Coverage.scala
2
95.51
 -1.12% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
2
80.0
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
2
84.31
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/CoverageRDD.scala
2
77.78
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/ADAM2Fasta.scala
3
69.7
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/util/ReferenceContigMap.scala
3
81.65
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
9
86.14
 -0.99% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
10
90.41
 1.37% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
26
82.83
 1.29% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
51
70.56
 0.51% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
61
79.3
 1.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
Jobs
ID Job ID Ran Files Coverage
1 1966.1 258
81.88
2 1966.2 258
81.91
3 1966.3 258
81.89
4 1966.4 258
81.89
5 1966.5 258
81.88
6 1966.6 258
81.91
7 1966.7 258
81.86
Source Files on build 1966
Coverage ∆ File Lines Relevant Covered Missed Hits/Line