bigdatagenomics / adam / 1965
81%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 8
Files 151
Run time 1min
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1965

Pull #1505

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/ea7db66afbcbb52f4fca26b437728eca5c568ebc">ea7db66af<a href="https://github.com/bigdatagenomics/adam/commit/ea7db66afbcbb52f4fca26b437728eca5c568ebc">">Merge </a><a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/db90335b2d6f84156c08ffa4797631f42e19a35d">db90335b2</a>">db90335b2</a><a href="https://github.com/bigdatagenomics/adam/commit/ea7db66afbcbb52f4fca26b437728eca5c568ebc"> into dbe5c97c3">dbe5c97c3</a>
Pull Request #1505: Adding read, sequence, and slice RDDs

213 of 213 new or added lines in 12 files covered. (100.0%)

5161 of 6288 relevant lines covered (82.08%)

6.56 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
96.97
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
2
77.78
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/ADAM2Fasta.scala
2
11.76
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/CountContigKmers.scala
3
69.7
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/util/ReferenceContigMap.scala
7
80.0
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/sequence/SequenceRDD.scala
7
83.72
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/sequence/SliceRDD.scala
20
79.05
 0.75% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
94.27
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/MdTag.scala
1
58.75
 -1.25% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
1
82.54
 -1.59% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTarget.scala
1
99.2
 0.02% adam-core/src/main/scala/org/bdgenomics/adam/serialization/ADAMKryoRegistrator.scala
1
88.24
 -5.88% adam-core/src/main/scala/org/bdgenomics/adam/util/IndexedFastaFile.scala
1
95.0
 -0.38% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/RealignIndels.scala
1
86.67
 6.67% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
1
67.31
 -1.92% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
1
96.97
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
1
91.26
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
1
85.32
 0.31% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
1
55.62
 0.56% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Transform.scala
2
83.49
 1.83% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
2
84.31
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/CoverageRDD.scala
2
95.51
 -1.12% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
2
77.78
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/ADAM2Fasta.scala
2
75.93
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
3
69.7
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/util/ReferenceContigMap.scala
3
58.44
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
6
89.11
 1.98% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
10
90.41
 1.37% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
27
82.4
 0.86% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
51
70.56
 0.51% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
63
79.05
 0.75% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
Jobs
ID Job ID Ran Files Coverage
1 1965.1 258
81.9
2 1965.2 258
81.9
3 1965.3 258
82.01
4 1965.4 258
82.01
5 1965.5 258
81.89
6 1965.6 258
82.0
7 1965.7 258
82.0
8 1965.8 258
81.89
Source Files on build 1965
Coverage ∆ File Lines Relevant Covered Missed Hits/Line