2612

Ran 22 Apr 2017 02:10PM UTC

Jobs 8

Files 147

Run time 1min

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Build # 2612

Build Type

push

jenkins

Committed by

fnothaft

Commit Message

[ADAM-1481] Refactor ADAMContext loadXxx methods for consistency (#1487)

Refactor ADAMContext loadXxx methods for consistency

* Format long lines
* Minor doc fixes
* Add FileExtensions, confirm pathName doc strings
* Use compression codecs from Hadoop configuration instead of hardcoded extensions.

Run Details

228 of 228 new or added lines in 15 files covered. (100.0%)

4986 of 6085 relevant lines covered (81.94%)

6.55 hits per line

New Missed Lines in Diff

Lines	Coverage	File
1	100.0	adam-cli/src/main/scala/org/bdgenomics/adam/cli/ADAM2Fastq.scala
1	100.0	adam-cli/src/main/scala/org/bdgenomics/adam/cli/CountContigKmers.scala
1	100.0	adam-cli/src/main/scala/org/bdgenomics/adam/cli/CountReadKmers.scala
1	100.0	adam-cli/src/main/scala/org/bdgenomics/adam/cli/FlagStat.scala
2	100.0	adam-apis/src/main/scala/org/bdgenomics/adam/apis/java/JavaADAMContext.scala
2	100.0	adam-core/src/main/scala/org/bdgenomics/adam/util/FileExtensions.scala
3	100.0	adam-cli/src/main/scala/org/bdgenomics/adam/cli/Transform.scala
35	100.0	adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala

Uncovered Existing Lines

Lines	Coverage	File
1	100.0	adam-apis/src/main/scala/org/bdgenomics/adam/apis/java/JavaADAMContext.scala
4	100.0	adam-cli/src/main/scala/org/bdgenomics/adam/cli/Transform.scala
43	100.0	adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala

Jobs

ID	Job ID	Ran	Coverage
1	2612.1	22 Apr 2017 02:10PM UTC	81.81
2	2612.2	22 Apr 2017 02:10PM UTC	81.81
3	2612.3	22 Apr 2017 02:10PM UTC	81.82
4	2612.4	22 Apr 2017 02:10PM UTC	81.84
5	2612.5	22 Apr 2017 02:10PM UTC	81.84
6	2612.6	22 Apr 2017 02:10PM UTC	81.86
7	2612.7	22 Apr 2017 02:10PM UTC	81.82
8	2612.8	22 Apr 2017 02:11PM UTC	81.86

Source Files on build 2612

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bigdatagenomics / adam / 2612

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bigdatagenomics / adam / 2612

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