bigdatagenomics / adam / 1955
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DEFAULT BRANCH: master
Ran
Jobs 8
Files 147
Run time 54s
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1955

Pull #1487

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://git"><a class=hub.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://git"><a class=hub.com/bigdatagenomics/adam/commit/15767eab91a1b3776f8f7dad9f01fe00e115cbed">15767eab9<a href="https://github.com/bigdatagenomics/adam/commit/15767eab91a1b3776f8f7dad9f01fe00e115cbed">&quot;&gt;&amp;lt;a href=&amp;quot;https://github.com/bigdatagenomics/adam/commit/&lt;/a&gt;&lt;a class=&quot;double-link&quot; href=&quot;https://github.com/bigdatagenomics/adam/commit/&amp;lt;a class=&amp;quot;double-link&amp;quot; href=&amp;quot;https://git&quot;&gt;&amp;lt;a class=&lt;/a&gt;hub.com/bigdatagenomics/adam/commit/15767eab91a1b3776f8f7dad9f01fe00e115cbed&quot;&gt;15767eab9&lt;/a&gt;&lt;a href=&quot;https://github.com/bigdatagenomics/adam/commit/15767eab91a1b3776f8f7dad9f01fe00e115cbed&quot;&gt;&amp;lt;a href=&amp;quot;https://github.com/bigdatagenomics/adam/commit/15767eab91a1b3776f8f7dad9f01fe00&lt;/a&gt;e115cbed">&quot;&gt;Merge &lt;/a&gt;&lt;a class=&quot;double-link&quot; href=&quot;https://github.com/bigdatagenomics/adam/commit/&lt;a class=&quot;double-link&quot; href=&quot;https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/b021e2ca8048146842b0d66af777625717fb8516">b021e2ca8</a><a href="https://github.com/bigdatagenomics/adam/commit/15767eab91a1b3776f8f7dad9f01fe00e115cbed">&amp;quot;&amp;gt;b021e2ca8&amp;lt;/a&amp;gt;&amp;quot;&amp;gt;b021e2ca8&amp;lt;/a&amp;gt;&amp;lt;a href=&amp;quot;https://github.com/bigdatagenomics/adam/commit/15767eab91a1b3776f8f7dad9f01fe00e115c&lt;/a&gt;bed&quot;&gt; into &lt;/a&gt;&lt;a class=&quot;double-link&quot; href=&quot;https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/04444aa22">04444aa22">04444aa22</a>
Pull Request #1487: [ADAM-1481] Refactor ADAMContext loadXxx methods for consistency

228 of 228 new or added lines in 15 files covered. (100.0%)

4990 of 6084 relevant lines covered (82.02%)

6.55 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
50.0
 0.0% adam-apis/src/main/scala/org/bdgenomics/adam/apis/java/JavaADAMContext.scala
1
6.67
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/ADAM2Fastq.scala
1
11.76
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/CountContigKmers.scala
1
9.09
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/CountReadKmers.scala
1
3.28
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/FlagStat.scala
2
90.0
 adam-core/src/main/scala/org/bdgenomics/adam/util/FileExtensions.scala
3
53.67
 -1.69% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Transform.scala
36
79.0
 1.08% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
50.0
 0.0% adam-apis/src/main/scala/org/bdgenomics/adam/apis/java/JavaADAMContext.scala
1
91.92
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
1
95.51
 2.25% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
1
94.19
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/SAMRecordConverter.scala
1
95.83
 -4.17% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferencePosition.scala
1
88.98
 -0.85% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
1
60.0
 -1.25% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
1
61.04
 5.19% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
1
81.9
 0.35% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
1
98.11
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/FlagStat.scala
2
65.38
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
2
69.04
 -1.02% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
3
88.12
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
4
53.67
 -1.69% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Transform.scala
20
79.0
 1.08% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
Jobs
ID Job ID Ran Files Coverage
1 1955.1 247
81.87
2 1955.2 247
81.85
3 1955.3 247
81.87
4 1955.4 247
81.85
5 1955.5 247
81.95
6 1955.6 247
81.94
7 1955.7 247
81.95
8 1955.8 247
81.94
Source Files on build 1955
Coverage ∆ File Lines Relevant Covered Missed Hits/Line