biocore / labadmin / 896

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Shotgun normalization for library prep (#220)

* Initial code

* Fixing condense_plates

* Adding tests

* Adding plate reader output parser

* Fixing parser

* Finishing up GUI

* Fixing row/col mess

* Fixing targeted num samples retrieved

* Adjust create_sequencing_run

* Adding initial code for pooling

* Fixing bug

* Adding get quantified list

* Finishing up pooling

* fixing link

* Adding sample sheet dir to the config file

* Adding SampleSheet generation

* Adding sequencing page

* Adding end seq endpoint

* Initial code

* Adding EPMotion formatter

* Addressing wet lab comments

* addressing comments

* Adding tests to the handler

* Fixing tests

* Writing prep tests

* assessing replicates

* adding run name to the prep:

* Adding uploads dir to config file

* Transferring data to Qiita uploads folder

* Cleaning the environment

* Assessing replicates at seq level

* Transferrring data to Qiita

* Fixing test

* Doing shotgun normalization

* Normalizing shotgun

* Adding echo pick list formatting

* Commiting

* pm-tickling

* flake8ing

* Solving test failures

* Removing complexity limit

* Addressing comments

94 of 94 new or added lines in 6 files covered. (100.0%)

3793 of 4112 relevant lines covered (92.24%)

0.92 hits per line