bigdatagenomics / adam / 1954
82%
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LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 8
Files 147
Run time 55s
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1954

Pull #1487

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://git"><a class=hub.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://git"><a class=hub.com/bigdatagenomics/adam/commit/e05ca5eb7ee734342869dcf086bc13e2647549c4">e05ca5eb7<a href="https://github.com/bigdatagenomics/adam/commit/e05ca5eb7ee734342869dcf086bc13e2647549c4">&quot;&gt;&amp;lt;a href=&amp;quot;https://github.com/bigdatagenomics/adam/commit/&lt;/a&gt;&lt;a class=&quot;double-link&quot; href=&quot;https://github.com/bigdatagenomics/adam/commit/&amp;lt;a class=&amp;quot;double-link&amp;quot; href=&amp;quot;https://git&quot;&gt;&amp;lt;a class=&lt;/a&gt;hub.com/bigdatagenomics/adam/commit/e05ca5eb7ee734342869dcf086bc13e2647549c4&quot;&gt;e05ca5eb7&lt;/a&gt;&lt;a href=&quot;https://github.com/bigdatagenomics/adam/commit/e05ca5eb7ee734342869dcf086bc13e2647549c4&quot;&gt;&amp;lt;a href=&amp;quot;https://github.com/bigdatagenomics/adam/commit/e05ca5eb7ee734342869dcf086bc13e2&lt;/a&gt;647549c4">&quot;&gt;Merge &lt;/a&gt;&lt;a class=&quot;double-link&quot; href=&quot;https://github.com/bigdatagenomics/adam/commit/&lt;a class=&quot;double-link&quot; href=&quot;https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/f3d1d3ce0f205a6ad039dbd9f23014bae4836cf1">f3d1d3ce0</a><a href="https://github.com/bigdatagenomics/adam/commit/e05ca5eb7ee734342869dcf086bc13e2647549c4">&amp;quot;&amp;gt;f3d1d3ce0&amp;lt;/a&amp;gt;&amp;quot;&amp;gt;f3d1d3ce0&amp;lt;/a&amp;gt;&amp;lt;a href=&amp;quot;https://github.com/bigdatagenomics/adam/commit/e05ca5eb7ee734342869dcf086bc13e264754&lt;/a&gt;9c4&quot;&gt; into &lt;/a&gt;&lt;a class=&quot;double-link&quot; href=&quot;https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/6c32a0254">6c32a0254">6c32a0254</a>
Pull Request #1487: [ADAM-1481] Refactor ADAMContext loadXxx methods for consistency

248 of 248 new or added lines in 15 files covered. (100.0%)

4996 of 6097 relevant lines covered (81.94%)

6.55 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
50.0
 0.0% adam-apis/src/main/scala/org/bdgenomics/adam/apis/java/JavaADAMContext.scala
1
6.67
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/ADAM2Fastq.scala
1
11.76
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/CountContigKmers.scala
1
9.09
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/CountReadKmers.scala
1
3.28
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/FlagStat.scala
1
90.91
 adam-core/src/main/scala/org/bdgenomics/adam/util/FileExtensions.scala
3
54.24
 -1.13% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Transform.scala
39
78.09
 0.17% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
50.0
 0.0% adam-apis/src/main/scala/org/bdgenomics/adam/apis/java/JavaADAMContext.scala
1
95.45
 -1.52% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
1
87.95
 -1.2% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastqRecordConverter.scala
1
94.19
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/SAMRecordConverter.scala
1
61.25
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
1
95.0
 -0.38% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/RealignIndels.scala
1
88.0
 -1.0% adam-core/src/main/scala/org/bdgenomics/adam/util/TwoBitFile.scala
2
85.02
 -0.15% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
2
88.12
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
2
91.67
 -8.33% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferencePosition.scala
2
80.0
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
2
69.54
 -0.51% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
2
82.57
 2.75% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
2
81.55
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
3
54.24
 -1.13% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Transform.scala
30
78.09
 0.17% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
Jobs
ID Job ID Ran Files Coverage
1 1954.1 247
81.79
2 1954.2 247
81.78
3 1954.3 247
81.79
4 1954.4 247
81.78
5 1954.5 247
81.88
6 1954.6 247
81.86
7 1954.7 247
81.88
8 1954.8 247
81.86
Source Files on build 1954
Coverage ∆ File Lines Relevant Covered Missed Hits/Line