bigdatagenomics / adam / 1949
82%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 8
Files 146
Run time 1min
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1949

Pull #1489

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/476c8799064cbd476474fd7390c01bbacba26e3f">476c87990<a href="https://github.com/bigdatagenomics/adam/commit/476c8799064cbd476474fd7390c01bbacba26e3f">">Merge </a><a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/fcf18f7bc65e5c1e2b57fa6974cde84c8ebe9fde">fcf18f7bc</a>">fcf18f7bc</a><a href="https://github.com/bigdatagenomics/adam/commit/476c8799064cbd476474fd7390c01bbacba26e3f"> into 6c32a0254">6c32a0254</a>
Pull Request #1489: [ADAM-1488] Only increment BQSR min quality by 33 once.

3 of 3 new or added lines in 2 files covered. (100.0%)

4927 of 6029 relevant lines covered (81.72%)

6.52 hits per line

Uncovered Existing Lines

Lines Coverage ∆ File
1
77.36
 1.89% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
1
93.26
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
1
94.19
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/SAMRecordConverter.scala
1
81.9
 0.35% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
1
95.0
 -0.38% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/RealignIndels.scala
1
84.13
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTarget.scala
1
88.0
 -1.0% adam-core/src/main/scala/org/bdgenomics/adam/util/TwoBitFile.scala
1
63.64
 7.79% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
1
88.12
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
1
95.45
 -1.52% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
2
91.67
 -8.33% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferencePosition.scala
2
61.25
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
2
73.33
 -6.67% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
2
61.54
 -3.85% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
2
85.02
 -0.15% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
3
69.04
 -1.02% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
3
81.65
 1.83% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
4
78.7
 0.78% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
Jobs
ID Job ID Ran Files Coverage
1 1949.1 246
81.46
2 1949.2 246
81.47
3 1949.3 246
81.47
4 1949.4 246
81.64
5 1949.5 246
81.46
6 1949.6 246
81.66
7 1949.7 246
81.66
8 1949.8 246
81.64
Source Files on build 1949
Coverage ∆ File Lines Relevant Covered Missed Hits/Line