bigdatagenomics / adam / 1948
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LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 8
Files 147
Run time 56s
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1948

Pull #1487

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://git"><a class=hub.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://git"><a class=hub.com/bigdatagenomics/adam/commit/94ea430819c371e437e0d75186d02de7389e346c">94ea43081<a href="https://github.com/bigdatagenomics/adam/commit/94ea430819c371e437e0d75186d02de7389e346c">&quot;&gt;&amp;lt;a href=&amp;quot;https://github.com/bigdatagenomics/adam/commit/&lt;/a&gt;&lt;a class=&quot;double-link&quot; href=&quot;https://github.com/bigdatagenomics/adam/commit/&amp;lt;a class=&amp;quot;double-link&amp;quot; href=&amp;quot;https://git&quot;&gt;&amp;lt;a class=&lt;/a&gt;hub.com/bigdatagenomics/adam/commit/94ea430819c371e437e0d75186d02de7389e346c&quot;&gt;94ea43081&lt;/a&gt;&lt;a href=&quot;https://github.com/bigdatagenomics/adam/commit/94ea430819c371e437e0d75186d02de7389e346c&quot;&gt;&amp;lt;a href=&amp;quot;https://github.com/bigdatagenomics/adam/commit/94ea430819c371e437e0d75186d02de7&lt;/a&gt;389e346c">&quot;&gt;Merge &lt;/a&gt;&lt;a class=&quot;double-link&quot; href=&quot;https://github.com/bigdatagenomics/adam/commit/&lt;a class=&quot;double-link&quot; href=&quot;https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/c7814c9aa7ab320c6975dd21cf40af9a77a456d9">c7814c9aa</a><a href="https://github.com/bigdatagenomics/adam/commit/94ea430819c371e437e0d75186d02de7389e346c">&amp;quot;&amp;gt;c7814c9aa&amp;lt;/a&amp;gt;&amp;quot;&amp;gt;c7814c9aa&amp;lt;/a&amp;gt;&amp;lt;a href=&amp;quot;https://github.com/bigdatagenomics/adam/commit/94ea430819c371e437e0d75186d02de7389e3&lt;/a&gt;46c&quot;&gt; into &lt;/a&gt;&lt;a class=&quot;double-link&quot; href=&quot;https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/6c32a0254">6c32a0254">6c32a0254</a>
Pull Request #1487: [ADAM-1481] Refactor ADAMContext loadXxx methods for consistency

220 of 220 new or added lines in 15 files covered. (100.0%)

4956 of 6058 relevant lines covered (81.81%)

6.54 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
6.67
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/ADAM2Fastq.scala
1
11.76
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/CountContigKmers.scala
1
9.09
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/CountReadKmers.scala
1
3.28
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/FlagStat.scala
2
50.0
 0.0% adam-apis/src/main/scala/org/bdgenomics/adam/apis/java/JavaADAMContext.scala
2
88.64
 adam-core/src/main/scala/org/bdgenomics/adam/util/FileExtensions.scala
3
54.24
 -1.13% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Transform.scala
39
77.99
 0.07% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
73.58
 -1.89% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
1
93.26
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
1
80.0
 -5.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/InterleavedFASTQInFormatter.scala
1
81.97
 0.43% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
1
96.23
 -1.89% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/FlagStat.scala
1
61.25
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
1
88.98
 -0.85% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
1
95.83
 -4.17% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferencePosition.scala
1
94.19
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/SAMRecordConverter.scala
1
91.92
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
1
86.67
 6.67% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
1
50.0
 0.0% adam-apis/src/main/scala/org/bdgenomics/adam/apis/java/JavaADAMContext.scala
2
65.38
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
2
69.54
 -0.51% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
2
81.65
 1.83% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
3
54.24
 -1.13% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Transform.scala
3
88.12
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
28
77.99
 0.07% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
Jobs
ID Job ID Ran Files Coverage
1 1948.1 247
81.69
2 1948.2 247
81.69
3 1948.3 247
81.68
4 1948.4 247
81.68
5 1948.5 247
81.76
6 1948.6 247
81.74
7 1948.7 247
81.74
8 1948.8 247
81.76
Source Files on build 1948
Coverage ∆ File Lines Relevant Covered Missed Hits/Line