bigdatagenomics / adam / 1935
82%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 8
Files 146
Run time 1min
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1935

Pull #1477

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/8ba5649a0635d569a60ec4df77876ae4906fa81e">8ba5649a0<a href="https://github.com/bigdatagenomics/adam/commit/8ba5649a0635d569a60ec4df77876ae4906fa81e">">Merge </a><a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/b20dce2b8d926061253cfdfb3814ca808080a161">b20dce2b8</a>">b20dce2b8</a><a href="https://github.com/bigdatagenomics/adam/commit/8ba5649a0635d569a60ec4df77876ae4906fa81e"> into 9505d47e8">9505d47e8</a>
Pull Request #1477: [ADAM-1476] Treat `.` ALT allele as symbolic non-ref.

1 of 1 new or added line in 1 file covered. (100.0%)

4926 of 6034 relevant lines covered (81.64%)

6.52 hits per line

Uncovered Existing Lines

Lines Coverage ∆ File
1
96.97
 -1.52% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
1
85.32
 0.33% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
1
91.92
 1.01% adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
1
87.95
 -1.2% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastqRecordConverter.scala
1
93.02
 -1.16% adam-core/src/main/scala/org/bdgenomics/adam/converters/SAMRecordConverter.scala
1
93.75
 -0.52% adam-core/src/main/scala/org/bdgenomics/adam/models/MdTag.scala
1
65.38
 3.85% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
1
64.29
 -7.14% adam-core/src/main/scala/org/bdgenomics/adam/projections/Projection.scala
1
98.11
 -1.89% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/FlagStat.scala
1
95.0
 -0.38% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/RealignIndels.scala
1
88.0
 -1.0% adam-core/src/main/scala/org/bdgenomics/adam/util/TwoBitFile.scala
2
73.58
 1.89% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
2
92.13
 -2.25% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
2
61.25
 -1.25% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
2
83.49
 1.83% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
3
86.14
 -1.98% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
3
77.12
 0.77% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
4
62.34
 -3.9% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
Jobs
ID Job ID Ran Files Coverage
1 1935.1 246
81.52
2 1935.2 246
81.5
3 1935.3 246
81.5
4 1935.4 246
81.54
5 1935.5 246
81.52
6 1935.6 246
81.54
7 1935.7 246
81.52
8 1935.8 246
81.52
Source Files on build 1935
Coverage ∆ File Lines Relevant Covered Missed Hits/Line