biocore / qiita / 5258
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Jobs 1
Files 201
Run time 11s
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antgonza 
A minimal REST API for Qiita (#2094)

* TST: Add initial test cases for study handler

* ENH: Add initial study rest api

* API: test if a study exists

* ENH: oauth2 forced

* Get back basic study deets

* TST: test for samples collection

* API: rest get sample IDs from a study

* ENH: samples/info handler

* broken routes

* API: request sample metadata

* ENH/API: Add methods to check for a study person

* ENH/API: Add POST methods for study person

* TST: Add tests for from_name_and_affiliation

* TST: study creation

* BUG: Add headers to tests

* ENH: create study

* Adjust GET on study description

* API: Add endpoints for preparation creation

* TST: 200 :D

* TST: Correctly verify study instantiation

* TST: prep artifact creation

* ENH/API: associate artifacts with a preparation

* TST: test study statys

* ENH: study status

* Removed trailing whitespace

* STY: PEP8

* MAINT: refactor, centralize setup boilerplate

* REFACTOR: Remove repeated code

* DOC: Remove unnecessary comments

* REFACTOR: Missing removal of pattern

* STY: Fix PEP8 errors

* BUG: Incorrectly changed error code

* BUG/TST: Fix typo in tests

* Addressing an @antgonza comment

* Another @antgonza comment

* RVW: Address review comments

* ENH: Cleanup webserver and name-spaces

* ENH: Improve error messages

* ENH: Add more descriptive error message

* TST: Exercise different argument types

* DOC: Add documentation for REST API

* ENH: Remove extra comma

589 of 589 new or added lines in 15 files covered. (100.0%)

19421 of 21130 relevant lines covered (91.91%)

0.92 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
100.0
 qiita_pet/test/rest/test_study.py
1
100.0
 qiita_pet/test/rest/test_study_person.py
1
100.0
 qiita_pet/test/rest/test_study_preparation.py
1
100.0
 qiita_pet/test/rest/test_study_samples.py
2
100.0
 qiita_pet/handlers/rest/study_preparation.py
10
100.0
 qiita_pet/handlers/rest/study.py

Uncovered Existing Lines

Lines Coverage ∆ File
1
100.0
 qiita_db/test/test_util.py
1
100.0
 qiita_pet/handlers/study_handlers/tests/test_listing_handlers.py
3
100.0
 qiita_db/util.py
Jobs
ID Job ID Ran Files Coverage
1 5258.1 (TEST_ADD_STUDIES=False) 0
91.91
 Travis Job 5258.1
Source Files on build 5258
Detailed source file information is not available for this build.