bigdatagenomics / adam / 1922
82%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 8
Files 146
Run time 53s
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1922

Pull #1412

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/a7c139b74a8c9b96d333f75b674480f68aa5c8f4">a7c139b74<a href="https://github.com/bigdatagenomics/adam/commit/a7c139b74a8c9b96d333f75b674480f68aa5c8f4">">Merge </a><a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/b6de9a51f3186d03275b50fc167287ed4f1e9a52">b6de9a51f</a>">b6de9a51f</a><a href="https://github.com/bigdatagenomics/adam/commit/a7c139b74a8c9b96d333f75b674480f68aa5c8f4"> into 65d8c9e21">65d8c9e21</a>
Pull Request #1412: INDEL realigner cleanup

299 of 299 new or added lines in 11 files covered. (100.0%)

4918 of 6028 relevant lines covered (81.59%)

6.52 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
94.27
 2.92% adam-core/src/main/scala/org/bdgenomics/adam/models/MdTag.scala
1
93.1
 8.1% adam-core/src/main/scala/org/bdgenomics/adam/rich/RichCigar.scala
4
82.54
 4.6% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTarget.scala
8
95.04
 9.88% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/RealignIndels.scala
9
55.37
 -0.25% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Transform.scala
10
69.7
 -30.3% adam-core/src/main/scala/org/bdgenomics/adam/util/ReferenceContigMap.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
98.48
 -1.52% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
1
88.98
 -0.85% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
1
65.38
 1.92% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
1
60.0
 -1.25% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
1
80.0
 -5.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/InterleavedFASTQInFormatter.scala
1
82.54
 4.6% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTarget.scala
1
89.13
 -2.17% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantContextRDD.scala
1
98.11
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/FlagStat.scala
1
59.46
 -2.7% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/MDTagging.scala
1
94.19
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/SAMRecordConverter.scala
1
96.63
 3.37% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
1
75.0
 -5.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Reads2Coverage.scala
2
87.5
 -8.33% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferencePosition.scala
2
81.65
 0.92% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
3
80.0
 -6.67% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
3
64.94
 1.3% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
4
88.12
 -2.97% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
4
84.69
 -0.61% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
7
77.38
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
Jobs
ID Job ID Ran Files Coverage
1 1922.1 246
81.42
2 1922.2 246
81.44
3 1922.3 246
81.42
4 1922.4 246
81.5
5 1922.5 246
81.44
6 1922.6 246
81.52
7 1922.7 246
81.52
8 1922.8 246
81.5
Source Files on build 1922
Coverage ∆ File Lines Relevant Covered Missed Hits/Line