bigdatagenomics / adam / 1906
82%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 8
Files 0
Run time 22s
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1906

Pull #1412

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/c654f05cc933b7292cbc3e7db2cda472a6cbbc2f">c654f05cc<a href="https://github.com/bigdatagenomics/adam/commit/c654f05cc933b7292cbc3e7db2cda472a6cbbc2f">">Merge </a><a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/80ad7907191587773d4d25c88595711b139ccdbd">80ad79071</a>">80ad79071</a><a href="https://github.com/bigdatagenomics/adam/commit/c654f05cc933b7292cbc3e7db2cda472a6cbbc2f"> into 629b778a4">629b778a4</a>
Pull Request #1412: INDEL realigner cleanup

203 of 203 new or added lines in 9 files covered. (100.0%)

4798 of 5898 relevant lines covered (81.35%)

3.25 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
93.23
 2.42% adam-core/src/main/scala/org/bdgenomics/adam/models/MdTag.scala
4
82.54
 1.66% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTarget.scala
7
54.29
 -1.34% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Transform.scala
10
93.97
 8.81% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/RealignIndels.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
90.91
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
1
89.11
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
1
95.83
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferencePosition.scala
1
80.0
 -5.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/InterleavedFASTQInFormatter.scala
1
88.0
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/util/TwoBitFile.scala
1
64.29
 -7.14% adam-core/src/main/scala/org/bdgenomics/adam/projections/Projection.scala
1
97.78
 -1.11% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ShuffleRegionJoin.scala
2
95.45
 -3.03% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
2
85.3
 0.31% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
2
96.63
 2.25% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
2
93.02
 -1.16% adam-core/src/main/scala/org/bdgenomics/adam/converters/SAMRecordConverter.scala
2
65.38
 -1.92% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
2
93.97
 8.81% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/RealignIndels.scala
2
82.54
 1.66% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTarget.scala
2
69.04
 -1.02% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
3
71.7
 -3.77% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
3
76.61
 1.8% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
4
81.65
 -1.83% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
11
81.03
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
50
54.29
 -1.34% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Transform.scala
Jobs
ID Job ID Ran Files Coverage
1 1906.1 244
81.33
2 1906.2 244
81.35
2 1906.2 244
81.35
3 1906.3 244
81.33
4 1906.4 244
81.35
5 1906.5 244
81.33
6 1906.6 244
81.33
7 1906.7 244
81.35
Source Files on build 1906
Coverage ∆ File Lines Relevant Covered Missed Hits/Line