3731
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Ran 20 Mar 2017 07:27PM UTC

Jobs 3

Files 41

Run time 1min

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Build # 3731

Build Type

push

travis-ci

Committed by

tomkinsc

Commit Message

Avoid exception when two sequences do not overlap (#623)

* Avoid exception when two sequences do not overlap

CoordMapper does not work when there are two sequences that do not overlap.
For example, consider an alignment of length 7 in which there are many
sequences, two of which are:
  --at----
  -----cg-
In this case, CoordMapper2Seqs cannot be instantiated on these
sequences; it raises Exception('CoordMapper2Seqs: no aligned bases.')
because there are no 'real' bases that overlap in the alignment.

This commit allows the object to be created by moving the check from
__init__() to __call__(). Since the sequences do not overlap,
__call__() should not be invoked and, therefore, an exception will
not be raised.

* Fix unit test

Run Details

5226 of 7390 relevant lines covered (70.72%)

2.11 hits per line

Jobs

ID	Job ID	Ran	Coverage
1	3731.1	20 Mar 2017 07:27PM UTC	70.62	Travis Job 3731.1
2	3731.2	20 Mar 2017 07:28PM UTC	70.51	Travis Job 3731.2
3	3731.3	20 Mar 2017 07:28PM UTC	70.09	Travis Job 3731.3

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