bigdatagenomics / adam / 1885
81%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 4
Files 140
Run time 2min
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1885

Pull #1440

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/1ae0225d47097c607c229c755be6b0de9c6992b9">1ae0225d4<a href="https://github.com/bigdatagenomics/adam/commit/1ae0225d47097c607c229c755be6b0de9c6992b9">">Merge </a><a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/5f5fbbc4d75b467dab71e3f4b474d41f2563476e">5f5fbbc4d</a>">5f5fbbc4d</a><a href="https://github.com/bigdatagenomics/adam/commit/1ae0225d47097c607c229c755be6b0de9c6992b9"> into cf39e6cbf">cf39e6cbf</a>
Pull Request #1440: Dependency version bump + BroadcastRegionJoin fix

15 of 15 new or added lines in 10 files covered. (100.0%)

4403 of 5758 relevant lines covered (76.47%)

3.06 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
71.64
 -1.09% adam-core/src/main/scala/org/bdgenomics/adam/rdd/contig/NucleotideContigFragmentRDD.scala
1
84.31
 -1.69% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/CoverageRDD.scala
1
89.13
 -4.2% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantContextRDD.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
70.0
 -5.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Reads2Coverage.scala
1
85.15
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
1
96.63
 1.12% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
1
94.19
 1.16% adam-core/src/main/scala/org/bdgenomics/adam/converters/SAMRecordConverter.scala
1
91.35
 -0.54% adam-core/src/main/scala/org/bdgenomics/adam/models/MdTag.scala
1
90.1
 -0.99% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
1
88.98
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
1
58.75
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
1
91.67
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferencePosition.scala
1
64.29
 -7.14% adam-core/src/main/scala/org/bdgenomics/adam/projections/Projection.scala
1
70.05
 -0.51% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
1
98.11
 -1.89% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/FlagStat.scala
1
76.47
 -1.47% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTarget.scala
1
84.52
 -0.65% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/RealignIndels.scala
1
89.13
 -4.2% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantContextRDD.scala
1
44.44
 -11.11% adam-core/src/main/scala/org/bdgenomics/adam/rich/RichVariant.scala
1
53.8
 -0.58% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Transform.scala
2
63.46
 -3.85% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
2
59.74
 1.3% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
2
87.0
 -1.0% adam-core/src/main/scala/org/bdgenomics/adam/util/TwoBitFile.scala
3
80.0
 -6.67% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
4
80.73
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
5
74.81
 0.26% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
Jobs
ID Job ID Ran Files Coverage
1 1885.1 243
76.45
2 1885.2 243
76.47
3 1885.3 243
76.45
4 1885.4 243
76.47
Source Files on build 1885
Coverage ∆ File Lines Relevant Covered Missed Hits/Line