bigdatagenomics / adam / 1874
77%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 8
Files 140
Run time 2min
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1874

Pull #1427

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/f0b54b67d701715c3e2acc655e31bab67ec92600">f0b54b67d<a href="https://github.com/bigdatagenomics/adam/commit/f0b54b67d701715c3e2acc655e31bab67ec92600">">Merge </a><a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/31769e720cf55b9a582f6d1bee499788483cdc56">31769e720</a>">31769e720</a><a href="https://github.com/bigdatagenomics/adam/commit/f0b54b67d701715c3e2acc655e31bab67ec92600"> into b8477dc37">b8477dc37</a>
Pull Request #1427: Add cache argument to loadFeatures, additional Feature timers

16 of 16 new or added lines in 4 files covered. (100.0%)

4400 of 5747 relevant lines covered (76.56%)

6.11 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
74.55
 0.07% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
71.43
 -3.57% adam-core/src/main/scala/org/bdgenomics/adam/algorithms/consensus/Consensus.scala
1
41.82
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rich/DecadentRead.scala
1
85.15
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
1
91.92
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
1
87.95
 -1.2% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastqRecordConverter.scala
1
95.51
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
1
91.67
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferencePosition.scala
1
88.98
 -0.85% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
1
58.75
 -1.25% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
1
86.67
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
1
80.0
 -5.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/InterleavedFASTQInFormatter.scala
2
81.3
 -0.87% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
2
59.46
 -5.41% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/MDTagging.scala
2
77.94
 -2.94% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTarget.scala
2
93.02
 -2.33% adam-core/src/main/scala/org/bdgenomics/adam/converters/SAMRecordConverter.scala
3
67.31
 -1.92% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
4
71.7
 -1.89% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
4
58.44
 -2.6% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
4
80.73
 -1.83% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
7
74.55
 0.07% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
9
88.0
 -0.64% adam-core/src/main/scala/org/bdgenomics/adam/util/TwoBitFile.scala
Jobs
ID Job ID Ran Files Coverage
1 1874.1 243
76.34
2 1874.2 243
76.51
3 1874.3 243
76.35
4 1874.4 243
76.35
5 1874.5 243
76.53
6 1874.6 243
76.34
7 1874.7 243
76.51
8 1874.8 243
76.53
Source Files on build 1874
Coverage ∆ File Lines Relevant Covered Missed Hits/Line