bigdatagenomics / adam / 1868
77%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 8
Files 141
Run time 3min
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1868

Pull #1434

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/57029b136cfac82a7c1ad5f457a9f33b06e88c09">57029b136<a href="https://github.com/bigdatagenomics/adam/commit/57029b136cfac82a7c1ad5f457a9f33b06e88c09">">Merge </a><a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/3c6a2a4311eea8a3d38e8c31d95c9d70f5fb89b2">3c6a2a431</a>">3c6a2a431</a><a href="https://github.com/bigdatagenomics/adam/commit/57029b136cfac82a7c1ad5f457a9f33b06e88c09"> into b8477dc37">b8477dc37</a>
Pull Request #1434: Add loadReadsFromSamString function into ADAMContext

35 of 35 new or added lines in 2 files covered. (100.0%)

4421 of 5757 relevant lines covered (76.79%)

6.13 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
7
77.17
 2.69% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
70.05
 1.02% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
1
62.34
 1.3% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
1
84.4
 1.83% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
1
80.0
 -5.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/InterleavedFASTQInFormatter.scala
1
81.74
 -0.43% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
1
62.16
 -2.7% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/MDTagging.scala
1
84.52
 -0.65% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/RealignIndels.scala
1
91.11
 -2.22% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantContextRDD.scala
1
71.43
 -3.57% adam-core/src/main/scala/org/bdgenomics/adam/algorithms/consensus/Consensus.scala
1
90.91
 -1.01% adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
1
87.95
 -1.2% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastqRecordConverter.scala
1
96.63
 1.12% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
1
88.98
 -0.85% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
1
61.25
 1.25% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
1
86.67
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
2
77.94
 -2.94% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTarget.scala
2
41.82
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rich/DecadentRead.scala
2
54.97
 -1.17% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Transform.scala
2
73.58
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
2
93.02
 -2.33% adam-core/src/main/scala/org/bdgenomics/adam/converters/SAMRecordConverter.scala
2
90.1
 2.97% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
3
84.69
 -0.46% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
4
61.54
 -7.69% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
8
89.0
 0.36% adam-core/src/main/scala/org/bdgenomics/adam/util/TwoBitFile.scala
61
77.17
 2.69% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
Jobs
ID Job ID Ran Files Coverage
1 1868.1 244
76.65
2 1868.2 244
76.67
3 1868.3 244
76.65
4 1868.4 244
76.67
5 1868.5 244
76.64
6 1868.6 244
76.64
7 1868.7 244
76.65
8 1868.8 244
76.65
Source Files on build 1868
Coverage ∆ File Lines Relevant Covered Missed Hits/Line