bigdatagenomics / adam / 1860
81%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 8
Files 135
Run time 46s
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1860

Pull #1423

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/caf0cbafc3019ea483bd71a5a881377ff7287356">caf0cbafc<a href="https://github.com/bigdatagenomics/adam/commit/caf0cbafc3019ea483bd71a5a881377ff7287356">">Merge </a><a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/b1c15889e2015a30d083bf3d54b7425cf14dd384">b1c15889e</a>">b1c15889e</a><a href="https://github.com/bigdatagenomics/adam/commit/caf0cbafc3019ea483bd71a5a881377ff7287356"> into 57264bb94">57264bb94</a>
Pull Request #1423: BQSR refactor for perf improvements

281 of 281 new or added lines in 15 files covered. (100.0%)

4559 of 5667 relevant lines covered (80.45%)

6.42 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
97.22
 97.22% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/recalibration/DinucCovariate.scala
2
56.47
 0.92% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Transform.scala
2
81.03
 -0.7% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
2
80.0
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/recalibration/Observation.scala
3
93.18
 93.18% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/recalibration/BaseQualityRecalibration.scala
3
90.32
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/recalibration/CovariateSpace.scala
10
83.05
 83.05% adam-core/src/main/scala/org/bdgenomics/adam/models/SnpTable.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
87.95
 -1.2% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastqRecordConverter.scala
1
88.98
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
1
64.29
 -7.14% adam-core/src/main/scala/org/bdgenomics/adam/projections/Projection.scala
1
88.0
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/util/TwoBitFile.scala
1
82.61
 3.58% adam-core/src/main/scala/org/bdgenomics/adam/rich/RichAlignmentRecord.scala
1
80.0
 -5.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/InterleavedFASTQInFormatter.scala
1
96.97
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
1
91.86
 -1.16% adam-core/src/main/scala/org/bdgenomics/adam/converters/SAMRecordConverter.scala
1
95.51
 -1.12% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
1
84.99
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
2
61.25
 -1.25% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
2
65.38
 1.92% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
2
80.0
 -13.33% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
2
80.73
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
2
83.87
 -1.29% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/RealignIndels.scala
2
59.46
 -5.41% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/MDTagging.scala
3
73.58
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
5
59.74
 -2.6% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
6
75.0
 -0.52% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
12
81.03
 -0.7% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
30
56.47
 0.92% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Transform.scala
Jobs
ID Job ID Ran Files Coverage
1 1860.1 233
80.25
2 1860.2 233
80.25
3 1860.3 233
80.24
4 1860.4 233
80.24
5 1860.5 233
80.34
6 1860.6 233
80.34
7 1860.7 233
80.32
8 1860.8 233
80.32
Source Files on build 1860
Coverage ∆ File Lines Relevant Covered Missed Hits/Line