bigdatagenomics / adam / 2502

DEFAULT BRANCH: master
Ran
Jobs 8
Files 132
Run time 56s
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2502

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jenkins

fnothaft 
feat: speed up 2bit file extract

On a single node with 20 workers, BaseRecalibration time is reduced from 5.8 min to 1.7 min.

21 of 21 new or added lines in 1 file covered. (100.0%)

4337 of 5677 relevant lines covered (76.4%)

6.1 hits per line

Uncovered Changes

Lines Coverage ∆ File
2
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/util/TwoBitFile.scala

Coverage Regressions

Lines Coverage ∆ File
4
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
3
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
3
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
3
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
3
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTarget.scala
2
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/converters/SAMRecordConverter.scala
2
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
1
100.0
 adam-cli/src/main/scala/org/bdgenomics/adam/cli/Transform.scala
1
100.0
 adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/models/MdTag.scala
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/FlagStat.scala
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/rich/DecadentRead.scala
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantContextRDD.scala
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
1
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/algorithms/consensus/Consensus.scala
Jobs
ID Job ID Ran Files Coverage
1 2502.1 0
76.22
2 2502.2 0
76.24
3 2502.3 0
76.22
4 2502.4 0
76.24
5 2502.5 0
76.33
6 2502.6 0
76.33
7 2502.7 0
76.34
8 2502.8 0
76.34
Source Files on build 2502
Detailed source file information is not available for this build.