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Feature/jenkins example (#8)

* Example of interacting with jenkins

* Demo interaction with jenkins and dockstore

* Added functions to get the descriptors, dockerfiles, and test parameter files

* Added functions to get all combinations of dockerfile, test parameters, and description

* Added jenkins to test tools

* Added test results

* Split dockerfile and parameter files tests to seperate classes

* Added reports and abstract class

* Changed report directory, initial Jenkins on Travis testing

* Moved travis config to default values until config file could be found on travis

* Changing install order to run docker image first

Update travis to run docker in detached mode

* Using build stage plugin restful api to get stage information from Jenkins pipeline

Fleshing out CLI

* Handling when a job exists but has not been ran

* Moved Jenkins Build Plugin API calls to seperate package, get log location for failed jobs

Removing unused classes

* Addding Jenkins files to SCM and modified Jenkins input tag parameter to use reference instead

* Added file report, fix time tests, abstract report

* Upgraded the groovy script to fail steps properly.  Tee the output to return more logs.

* Added jenkinsPlaybook to install tools, increase coverage

Rearranged project structure

* Migrating to blue ocean api because build step stage plugin reports incorrect steps sometimes

Fix variable name typo, changed warn to debug for user api, updated readme to use proper markdown

* Added sync command

* Added more asserts into tests, modified client to allow testing of unverified tools

* Feature/jenkins example (#5)

* Example of interacting with jenkins

* Demo interaction with jenkins and dockstore

* Added functions to get the descriptors, dockerfiles, and test parameter files

* Added functions to get all combinations of dockerfile, test parameters, and description

* Added jenkins to test tools

* Added test results

* Split dockerfile and parameter files tests to seperate classes

* Added reports and abstract class

* Adding the missing exception handler class

* Changed report directory, initial Jenkins on Travis testing

* Travis fix.  Using slf4j logger

* Adding missing dependancy to pom

* Adding slf4j-simple binding for slf4j

* Seeing if Travis can see .tooltester/config

* Moved travis config to default values until config file could be found on travis

* Changing install order to run docker image first

* Update travis to run docker in detached mode

* Changing to correct jenkins username/password defaults

* Removed more debug information and unused dependency

* Using build stage plugin restful api to get stage information from Jenkins pipeline

* Fleshing out CLI

* Handling when a job exists but has not been ran

* Moved Jenkins Build Plugin API calls to seperate package, get log location for failed jobs

* Initial fix for cobertura

* More clean up of unused functions

* Addding Jenkins files to SCM and modified Jenkins input tag parameter to use reference instead

* Added file report, fix time tests, abstract report

* Removed delete jobs from testing, removed config file because it's not needed on Travis

* Added comments in .travis.yml

* Upgraded the groovy script to fail steps properly.  Tee the output to return more logs.

* Added jenkinsPlaybook to install tools, increase coverage

* Modifying test to account for always changing # of verified tools

Fix for when Jenkins API breaks

* Pretty print reports and added documentation

470 of 602 relevant lines covered (78.07%)

8.59 hits per line

Jobs
ID Job ID Ran Files Coverage
1 223.1 0
78.07
 Travis Job 223.1
Source Files on build 223
Detailed source file information is not available for this build.