bigdatagenomics / adam / 1855
81%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 8
Files 132
Run time 48s
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1855

Pull #1423

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/0d5fb8e61697599460d2f5607add3417f3a44b9d">0d5fb8e61<a href="https://github.com/bigdatagenomics/adam/commit/0d5fb8e61697599460d2f5607add3417f3a44b9d">">Merge </a><a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/e2bd7c5b4620eb0a3526c1cea6f47b1f4aa9086a">e2bd7c5b4</a>">e2bd7c5b4</a><a href="https://github.com/bigdatagenomics/adam/commit/0d5fb8e61697599460d2f5607add3417f3a44b9d"> into 07c1982fb">07c1982fb</a>
Pull Request #1423: BQSR refactor for perf improvements

181 of 181 new or added lines in 10 files covered. (100.0%)

4636 of 5788 relevant lines covered (80.1%)

6.4 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
97.5
 97.5% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/recalibration/BaseQualityRecalibration.scala
1
97.22
 97.22% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/recalibration/DinucCovariate.scala
1
96.55
 96.55% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/recalibration/ObservationTable.scala
5
56.21
 0.07% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Transform.scala
5
83.0
 83.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/recalibration/Recalibrator.scala
10
83.05
 83.05% adam-core/src/main/scala/org/bdgenomics/adam/models/SnpTable.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
75.47
 1.89% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
1
87.5
 -4.17% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferencePosition.scala
1
88.98
 -0.85% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
1
60.0
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
1
88.64
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/util/TwoBitFile.scala
1
96.63
 1.12% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
1
87.95
 -1.2% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastqRecordConverter.scala
2
88.12
 0.99% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
2
80.73
 -1.83% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
2
77.94
 -2.94% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTarget.scala
2
93.02
 -2.33% adam-core/src/main/scala/org/bdgenomics/adam/converters/SAMRecordConverter.scala
2
84.99
 -0.15% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
4
58.44
 -2.6% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
8
74.74
 0.26% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
10
79.03
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rich/RichAlignmentRecord.scala
11
82.17
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
12
83.0
 83.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/recalibration/Recalibrator.scala
19
56.21
 0.07% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Transform.scala
Jobs
ID Job ID Ran Files Coverage
1 1855.1 236
79.96
2 1855.2 236
79.98
3 1855.3 236
79.96
4 1855.4 236
79.98
5 1855.5 236
79.96
6 1855.6 236
79.96
7 1855.7 236
79.98
8 1855.8 236
79.98
Source Files on build 1855
Coverage ∆ File Lines Relevant Covered Missed Hits/Line