bigdatagenomics / adam / 1844

DEFAULT BRANCH: master
Ran
Jobs 8
Files 132
Run time 59s
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1844

Pull #1426

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/b3540435aa9fdd40fe184b5e509e8f9d7024e3a8">b3540435a<a href="https://github.com/bigdatagenomics/adam/commit/b3540435aa9fdd40fe184b5e509e8f9d7024e3a8">">Merge </a><a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/1a53ce5f7239dad3acf8be53d49d5c7c8652352b">1a53ce5f7</a>">1a53ce5f7</a><a href="https://github.com/bigdatagenomics/adam/commit/b3540435aa9fdd40fe184b5e509e8f9d7024e3a8"> into 07c1982fb">07c1982fb</a>
Pull Request #1426: feat: speed up 2bit file extract

21 of 21 new or added lines in 1 file covered. (100.0%)

4337 of 5677 relevant lines covered (76.4%)

6.1 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
2
88.0
 -0.64% adam-core/src/main/scala/org/bdgenomics/adam/util/TwoBitFile.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
55.56
 -0.58% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Transform.scala
1
73.58
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
1
90.91
 -1.01% adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
1
96.63
 1.12% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
1
88.98
 -0.85% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
1
69.04
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
1
91.11
 -2.22% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantContextRDD.scala
1
43.64
 1.82% adam-core/src/main/scala/org/bdgenomics/adam/rich/DecadentRead.scala
1
98.11
 -1.89% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/FlagStat.scala
1
62.34
 1.3% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
1
93.33
 6.67% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
1
91.35
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/MdTag.scala
1
84.99
 -0.15% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
1
71.43
 -3.57% adam-core/src/main/scala/org/bdgenomics/adam/algorithms/consensus/Consensus.scala
2
81.74
 -0.43% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
2
93.02
 -2.33% adam-core/src/main/scala/org/bdgenomics/adam/converters/SAMRecordConverter.scala
3
80.73
 -1.83% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
3
75.52
 1.03% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
3
88.12
 0.99% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
3
76.47
 -4.41% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTarget.scala
4
63.46
 -5.77% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
Jobs
ID Job ID Ran Files Coverage
1 1844.1 235
76.22
2 1844.2 235
76.34
3 1844.3 235
76.33
4 1844.4 235
76.22
5 1844.5 235
76.24
6 1844.6 235
76.33
7 1844.7 235
76.34
8 1844.8 235
76.24
Source Files on build 1844
Coverage ∆ File Lines Relevant Covered Missed Hits/Line