bigdatagenomics / adam / 1824
76%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 8
Files 132
Run time 2min
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1824

Pull #1411

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/91123d837772827d19d1e61ebf4d5ecf25922ed4">91123d837<a href="https://github.com/bigdatagenomics/adam/commit/91123d837772827d19d1e61ebf4d5ecf25922ed4">">Merge </a><a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/d77a184834a36813ef51cacdebbd3edfa6c467fa">d77a18483</a>">d77a18483</a><a href="https://github.com/bigdatagenomics/adam/commit/91123d837772827d19d1e61ebf4d5ecf25922ed4"> into eb4aa6ce8">eb4aa6ce8</a>
Pull Request #1411: Estimate contig lengths in SequenceDictionary for BED, GFF3, GTF, and NarrowPeak feature formats

6 of 6 new or added lines in 2 files covered. (100.0%)

4313 of 5663 relevant lines covered (76.16%)

6.08 hits per line

Uncovered Existing Lines

Lines Coverage ∆ File
1
98.11
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/FlagStat.scala
1
81.74
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
1
43.64
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rich/DecadentRead.scala
1
88.64
 -1.14% adam-core/src/main/scala/org/bdgenomics/adam/util/TwoBitFile.scala
1
95.45
 -1.52% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
1
93.02
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/SAMRecordConverter.scala
1
91.67
 -4.17% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferencePosition.scala
1
88.98
 -0.85% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
1
69.23
 -1.92% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
1
75.47
 1.89% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
2
54.39
 -0.58% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Transform.scala
2
91.35
 -1.08% adam-core/src/main/scala/org/bdgenomics/adam/models/MdTag.scala
2
86.14
 -1.98% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
2
59.49
 -1.27% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
2
64.94
 2.6% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
3
94.38
 -2.25% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
3
73.33
 -20.0% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
5
80.73
 -0.92% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
8
73.71
 -1.1% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
Jobs
ID Job ID Ran Files Coverage
1 1824.1 235
75.98
2 1824.2 235
76.02
3 1824.3 235
75.98
4 1824.4 235
76.02
5 1824.5 235
76.0
6 1824.6 235
76.04
7 1824.7 235
76.0
8 1824.8 235
76.04
Source Files on build 1824
Coverage ∆ File Lines Relevant Covered Missed Hits/Line