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bigdatagenomics / gnocchi / 84
37%

Build:
DEFAULT BRANCH: master
Ran 02 Mar 2017 03:17PM UTC
Jobs 4
Files 53
Run time 30s
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[GNOCCHI-10] Adding CI scripts.

Resolves #10:

* Run scalariform and fix license headers.
* Deleting Gnocchi-test submodule.
* Add coverage profile with support for pushing to coveralls.
* Misc. pom.xml cleanup.
* Scala 2.11 cannot have case classes without ().
* Remove commented files.

432 of 1165 relevant lines covered (37.08%)

1.48 hits per line

Uncovered Existing Lines

Lines Coverage ∆ File
1
100.0
gnocchi-core/src/main/scala/net/fnothaft/gnocchi/association/LogisticValidationRegression.scala
1
100.0
gnocchi-core/src/main/scala/net/fnothaft/gnocchi/models/Phenotype.scala
1
100.0
gnocchi-core/src/main/scala/net/fnothaft/gnocchi/transformations/Gs2variant.scala
1
100.0
gnocchi-core/src/main/scala/net/fnothaft/gnocchi/transformations/PairSamplesWithPhenotypes.scala
1
100.0
gnocchi-core/src/main/scala/net/fnothaft/gnocchi/models/VariantModel.scala
1
100.0
gnocchi-core/src/main/scala/net/fnothaft/gnocchi/gnocchiModel/BuildDominantLinearGnocchiModel.scala
1
100.0
gnocchi-core/src/main/scala/net/fnothaft/gnocchi/gnocchiModel/BuildDominantLogisticGnocchiModel.scala
1
100.0
gnocchi-core/src/main/scala/net/fnothaft/gnocchi/gnocchiModel/BuildVariantModel.scala
1
100.0
gnocchi-cli/src/main/scala/net/fnothaft/gnocchi/cli/SaveGnocchiModel.scala
1
100.0
gnocchi-cli/src/main/scala/net/fnothaft/gnocchi/cli/GetVariantIds.scala
2
100.0
gnocchi-core/src/main/scala/net/fnothaft/gnocchi/models/AuxEncoders.scala
2
100.0
gnocchi-core/src/main/scala/net/fnothaft/gnocchi/transformations/Obs2LabeledPoints.scala
2
100.0
gnocchi-core/src/main/scala/net/fnothaft/gnocchi/gnocchiModel/BuildGnocchiModel.scala
2
100.0
gnocchi-cli/src/main/scala/net/fnothaft/gnocchi/cli/LoadGnocchiModel.scala
3
100.0
gnocchi-core/src/main/scala/net/fnothaft/gnocchi/models/GenotypeState.scala
4
100.0
gnocchi-core/src/main/scala/net/fnothaft/gnocchi/association/LoadPhenotypesWithoutCovariates.scala
4
100.0
gnocchi-cli/src/main/scala/net/fnothaft/gnocchi/cli/GetAndFillVariantIds.scala
4
100.0
gnocchi-core/src/main/scala/net/fnothaft/gnocchi/models/LinearVariantModel.scala
4
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gnocchi-core/src/main/scala/net/fnothaft/gnocchi/association/MonteCarlo.scala
5
100.0
gnocchi-core/src/main/scala/net/fnothaft/gnocchi/association/Progressive.scala
5
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gnocchi-core/src/main/scala/net/fnothaft/gnocchi/association/EndProgressive.scala
5
100.0
gnocchi-core/src/main/scala/net/fnothaft/gnocchi/models/AdditiveLinearGnocchiModel.scala
5
100.0
gnocchi-core/src/main/scala/net/fnothaft/gnocchi/models/AdditiveLogisticGnocchiModel.scala
6
100.0
gnocchi-core/src/main/scala/net/fnothaft/gnocchi/gnocchiModel/BuildAdditiveLinearGnocchiModel.scala
6
100.0
gnocchi-core/src/main/scala/net/fnothaft/gnocchi/gnocchiModel/BuildAdditiveLogisticGnocchiModel.scala
6
100.0
gnocchi-cli/src/main/scala/net/fnothaft/gnocchi/cli/GnocchiMain.scala
7
100.0
gnocchi-core/src/main/scala/net/fnothaft/gnocchi/association/LogisticSiteRegression.scala
7
100.0
gnocchi-cli/src/main/scala/net/fnothaft/gnocchi/cli/RegressPhenotypes.scala
7
100.0
gnocchi-cli/src/main/scala/net/fnothaft/gnocchi/cli/UpdateGnocchiModel.scala
8
100.0
gnocchi-core/src/main/scala/net/fnothaft/gnocchi/association/SiteRegression.scala
8
100.0
gnocchi-core/src/main/scala/net/fnothaft/gnocchi/similarity/SampleSimilarity.scala
8
100.0
gnocchi-core/src/main/scala/net/fnothaft/gnocchi/sql/GnocchiContext.scala
9
100.0
gnocchi-cli/src/main/scala/net/fnothaft/gnocchi/cli/PredictWithGnocchiModel.scala
9
100.0
gnocchi-core/src/main/scala/net/fnothaft/gnocchi/clustering/WideFlatPCA.scala
9
100.0
gnocchi-cli/src/main/scala/net/fnothaft/gnocchi/cli/EvaluateGnocchiModel.scala
10
100.0
gnocchi-core/src/main/scala/net/fnothaft/gnocchi/association/LoadPhenotypesWithCovariates.scala
10
100.0
gnocchi-core/src/main/scala/net/fnothaft/gnocchi/association/kfolds.scala
11
100.0
gnocchi-core/src/main/scala/net/fnothaft/gnocchi/sql/GenotypeStateMatrix.scala
11
100.0
gnocchi-cli/src/main/scala/net/fnothaft/gnocchi/cli/FillIn.scala
11
100.0
gnocchi-core/src/main/scala/net/fnothaft/gnocchi/association/Ensembler.scala
15
100.0
gnocchi-cli/src/main/scala/net/fnothaft/gnocchi/cli/ComputeSampleSimilarity.scala
16
100.0
gnocchi-cli/src/main/scala/net/fnothaft/gnocchi/cli/ReduceDimensions.scala
16
100.0
gnocchi-core/src/main/scala/net/fnothaft/gnocchi/association/ValidationRegression.scala
17
100.0
gnocchi-core/src/main/scala/net/fnothaft/gnocchi/models/LogisticVariantModel.scala
20
100.0
gnocchi-core/src/main/scala/net/fnothaft/gnocchi/models/GnocchiModel.scala
25
100.0
gnocchi-cli/src/main/scala/net/fnothaft/gnocchi/cli/ConstructGnocchiModel.scala
68
100.0
gnocchi-cli/src/main/scala/net/fnothaft/gnocchi/cli/EvaluateModel.scala
Jobs
ID Job ID Ran Files Coverage
1 84.1 02 Mar 2017 03:17PM UTC 0
36.91
2 84.2 02 Mar 2017 03:18PM UTC 0
37.0
3 84.3 02 Mar 2017 03:18PM UTC 0
36.91
4 84.4 02 Mar 2017 03:18PM UTC 0
37.0
Source Files on build 84
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  • Coverage Changed 15
Coverage ∆ File Lines Relevant Covered Missed Hits/Line
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