84
37%

Ran 02 Mar 2017 03:17PM UTC

Jobs 4

Files 53

Run time 30s

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Build # 84

Build Type

push

jenkins

Committed by

heuermh

Commit Message

[GNOCCHI-10] Adding CI scripts.

Resolves #10:

* Run scalariform and fix license headers.
* Deleting Gnocchi-test submodule.
* Add coverage profile with support for pushing to coveralls.
* Misc. pom.xml cleanup.
* Scala 2.11 cannot have case classes without ().
* Remove commented files.

Run Details

432 of 1165 relevant lines covered (37.08%)

1.48 hits per line

Uncovered Existing Lines

Lines	Coverage	File
1	100.0	gnocchi-core/src/main/scala/net/fnothaft/gnocchi/association/LogisticValidationRegression.scala
1	100.0	gnocchi-core/src/main/scala/net/fnothaft/gnocchi/models/Phenotype.scala
1	100.0	gnocchi-core/src/main/scala/net/fnothaft/gnocchi/transformations/Gs2variant.scala
1	100.0	gnocchi-core/src/main/scala/net/fnothaft/gnocchi/transformations/PairSamplesWithPhenotypes.scala
1	100.0	gnocchi-core/src/main/scala/net/fnothaft/gnocchi/models/VariantModel.scala
1	100.0	gnocchi-core/src/main/scala/net/fnothaft/gnocchi/gnocchiModel/BuildDominantLinearGnocchiModel.scala
1	100.0	gnocchi-core/src/main/scala/net/fnothaft/gnocchi/gnocchiModel/BuildDominantLogisticGnocchiModel.scala
1	100.0	gnocchi-core/src/main/scala/net/fnothaft/gnocchi/gnocchiModel/BuildVariantModel.scala
1	100.0	gnocchi-cli/src/main/scala/net/fnothaft/gnocchi/cli/SaveGnocchiModel.scala
1	100.0	gnocchi-cli/src/main/scala/net/fnothaft/gnocchi/cli/GetVariantIds.scala
2	100.0	gnocchi-core/src/main/scala/net/fnothaft/gnocchi/models/AuxEncoders.scala
2	100.0	gnocchi-core/src/main/scala/net/fnothaft/gnocchi/transformations/Obs2LabeledPoints.scala
2	100.0	gnocchi-core/src/main/scala/net/fnothaft/gnocchi/gnocchiModel/BuildGnocchiModel.scala
2	100.0	gnocchi-cli/src/main/scala/net/fnothaft/gnocchi/cli/LoadGnocchiModel.scala
3	100.0	gnocchi-core/src/main/scala/net/fnothaft/gnocchi/models/GenotypeState.scala
4	100.0	gnocchi-core/src/main/scala/net/fnothaft/gnocchi/association/LoadPhenotypesWithoutCovariates.scala
4	100.0	gnocchi-cli/src/main/scala/net/fnothaft/gnocchi/cli/GetAndFillVariantIds.scala
4	100.0	gnocchi-core/src/main/scala/net/fnothaft/gnocchi/models/LinearVariantModel.scala
4	100.0	gnocchi-core/src/main/scala/net/fnothaft/gnocchi/association/MonteCarlo.scala
5	100.0	gnocchi-core/src/main/scala/net/fnothaft/gnocchi/association/Progressive.scala
5	100.0	gnocchi-core/src/main/scala/net/fnothaft/gnocchi/association/EndProgressive.scala
5	100.0	gnocchi-core/src/main/scala/net/fnothaft/gnocchi/models/AdditiveLinearGnocchiModel.scala
5	100.0	gnocchi-core/src/main/scala/net/fnothaft/gnocchi/models/AdditiveLogisticGnocchiModel.scala
6	100.0	gnocchi-core/src/main/scala/net/fnothaft/gnocchi/gnocchiModel/BuildAdditiveLinearGnocchiModel.scala
6	100.0	gnocchi-core/src/main/scala/net/fnothaft/gnocchi/gnocchiModel/BuildAdditiveLogisticGnocchiModel.scala
6	100.0	gnocchi-cli/src/main/scala/net/fnothaft/gnocchi/cli/GnocchiMain.scala
7	100.0	gnocchi-core/src/main/scala/net/fnothaft/gnocchi/association/LogisticSiteRegression.scala
7	100.0	gnocchi-cli/src/main/scala/net/fnothaft/gnocchi/cli/RegressPhenotypes.scala
7	100.0	gnocchi-cli/src/main/scala/net/fnothaft/gnocchi/cli/UpdateGnocchiModel.scala
8	100.0	gnocchi-core/src/main/scala/net/fnothaft/gnocchi/association/SiteRegression.scala
8	100.0	gnocchi-core/src/main/scala/net/fnothaft/gnocchi/similarity/SampleSimilarity.scala
8	100.0	gnocchi-core/src/main/scala/net/fnothaft/gnocchi/sql/GnocchiContext.scala
9	100.0	gnocchi-cli/src/main/scala/net/fnothaft/gnocchi/cli/PredictWithGnocchiModel.scala
9	100.0	gnocchi-core/src/main/scala/net/fnothaft/gnocchi/clustering/WideFlatPCA.scala
9	100.0	gnocchi-cli/src/main/scala/net/fnothaft/gnocchi/cli/EvaluateGnocchiModel.scala
10	100.0	gnocchi-core/src/main/scala/net/fnothaft/gnocchi/association/LoadPhenotypesWithCovariates.scala
10	100.0	gnocchi-core/src/main/scala/net/fnothaft/gnocchi/association/kfolds.scala
11	100.0	gnocchi-core/src/main/scala/net/fnothaft/gnocchi/sql/GenotypeStateMatrix.scala
11	100.0	gnocchi-cli/src/main/scala/net/fnothaft/gnocchi/cli/FillIn.scala
11	100.0	gnocchi-core/src/main/scala/net/fnothaft/gnocchi/association/Ensembler.scala
15	100.0	gnocchi-cli/src/main/scala/net/fnothaft/gnocchi/cli/ComputeSampleSimilarity.scala
16	100.0	gnocchi-cli/src/main/scala/net/fnothaft/gnocchi/cli/ReduceDimensions.scala
16	100.0	gnocchi-core/src/main/scala/net/fnothaft/gnocchi/association/ValidationRegression.scala
17	100.0	gnocchi-core/src/main/scala/net/fnothaft/gnocchi/models/LogisticVariantModel.scala
20	100.0	gnocchi-core/src/main/scala/net/fnothaft/gnocchi/models/GnocchiModel.scala
25	100.0	gnocchi-cli/src/main/scala/net/fnothaft/gnocchi/cli/ConstructGnocchiModel.scala
68	100.0	gnocchi-cli/src/main/scala/net/fnothaft/gnocchi/cli/EvaluateModel.scala

Jobs

ID	Job ID	Ran	Coverage
1	84.1	02 Mar 2017 03:17PM UTC	36.91
2	84.2	02 Mar 2017 03:18PM UTC	37.0
3	84.3	02 Mar 2017 03:18PM UTC	36.91
4	84.4	02 Mar 2017 03:18PM UTC	37.0

bigdatagenomics / gnocchi / 84
37%

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