bigdatagenomics / adam / 1821
76%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 8
Files 132
Run time 3min
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1821

Pull #1411

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/ad3c663a2d29cad5a1d97058554dc53b83af8121">ad3c663a2<a href="https://github.com/bigdatagenomics/adam/commit/ad3c663a2d29cad5a1d97058554dc53b83af8121">">Merge </a><a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/e74c392929c5f28aafae697760b903c17dfaafa1">e74c39292</a>">e74c39292</a><a href="https://github.com/bigdatagenomics/adam/commit/ad3c663a2d29cad5a1d97058554dc53b83af8121"> into eb4aa6ce8">eb4aa6ce8</a>
Pull Request #1411: Estimate contig lengths in SequenceDictionary for BED, GFF3, GTF, and NarrowPeak feature formats

6 of 6 new or added lines in 2 files covered. (100.0%)

4313 of 5663 relevant lines covered (76.16%)

6.08 hits per line

Uncovered Existing Lines

Lines Coverage ∆ File
1
75.47
 1.89% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
1
91.67
 -4.17% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferencePosition.scala
1
69.23
 -1.92% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
1
88.98
 -0.85% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
1
81.74
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
1
88.64
 -1.14% adam-core/src/main/scala/org/bdgenomics/adam/util/TwoBitFile.scala
1
43.64
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rich/DecadentRead.scala
1
98.11
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/FlagStat.scala
1
95.45
 -1.52% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
1
93.02
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/SAMRecordConverter.scala
2
91.35
 -1.08% adam-core/src/main/scala/org/bdgenomics/adam/models/MdTag.scala
2
64.94
 2.6% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
2
59.49
 -1.27% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
2
86.14
 -1.98% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
2
54.39
 -0.58% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Transform.scala
3
73.33
 -20.0% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
3
94.38
 -2.25% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
5
80.73
 -0.92% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
8
73.71
 -1.1% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
9
87.5
 0.11% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureRDD.scala
Jobs
ID Job ID Ran Files Coverage
1 1821.1 235
76.04
2 1821.2 235
76.0
3 1821.3 235
75.98
4 1821.4 235
76.04
5 1821.5 235
76.0
6 1821.6 235
76.02
7 1821.7 235
75.98
8 1821.8 235
76.02
Source Files on build 1821
Coverage ∆ File Lines Relevant Covered Missed Hits/Line