Ran
|
Jobs
3
|
Files
39
|
Run time
2min
|
Badge
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README BADGES
|
travis-ci
343 of 343 new or added lines in 18 files covered. (100.0%)
3162 of 7128 relevant lines covered (44.36%)
1.32 hits per line
Lines | Coverage | ∆ | File |
---|---|---|---|
1 |
54.19 |
-25.54% | tools/picard.py |
1 |
79.71 |
-5.29% | tools/samtools.py |
1 |
19.44 |
-8.33% | tools/snpeff.py |
1 |
43.68 |
-17.19% | util/file.py |
3 |
15.49 |
-19.61% | ncbi.py |
3 |
50.24 |
-4.3% | tools/__init__.py |
4 |
59.25 |
-21.0% | assembly.py |
6 |
44.44 |
-43.26% | tools/bwa.py |
6 |
77.86 |
-5.34% | tools/novoalign.py |
6 |
56.41 |
-20.45% | util/misc.py |
7 |
33.38 |
-35.63% | intrahost.py |
9 |
47.1 |
-0.66% | util/cmd.py |
13 |
13.98 |
-75.24% | taxon_filter.py |
23 |
80.21 |
-1.65% | metagenomics.py |
23 |
19.03 |
-63.72% | read_utils.py |
Lines | Coverage | ∆ | File |
---|---|---|---|
1 |
78.38 |
-2.7% | tools/muscle.py |
1 |
95.45 |
-2.32% | tools/krona.py |
3 |
94.94 |
2.53% | tools/kraken.py |
3 |
83.33 |
-3.33% | tools/mafft.py |
4 |
77.86 |
-5.34% | tools/novoalign.py |
4 |
53.85 |
-30.77% | tools/trimmomatic.py |
8 |
30.36 |
-14.29% | tools/tbl2asn.py |
11 |
79.71 |
-5.29% | tools/samtools.py |
12 |
19.44 |
-8.33% | tools/snpeff.py |
13 |
51.61 |
-41.94% | tools/trinity.py |
14 |
0.0 |
-31.82% | tools/megan.py |
20 |
33.33 |
-51.28% | tools/blast.py |
20 |
50.24 |
-4.3% | tools/__init__.py |
21 |
35.14 |
-56.76% | tools/mvicuna.py |
27 |
41.38 |
-46.55% | tools/last.py |
30 |
36.36 |
-45.45% | tools/bmtagger.py |
35 |
64.99 |
-9.28% | tools/mummer.py |
36 |
23.64 |
-65.45% | tools/prinseq.py |
41 |
80.21 |
-1.65% | metagenomics.py |
43 |
56.41 |
-20.45% | util/misc.py |
44 |
25.32 |
-18.88% | util/vcf.py |
47 |
43.68 |
-17.19% | util/file.py |
49 |
44.44 |
-43.26% | tools/bwa.py |
55 |
15.49 |
-19.61% | ncbi.py |
59 |
54.19 |
-25.54% | tools/picard.py |
139 |
22.61 |
-49.12% | interhost.py |
197 |
59.25 |
-21.0% | assembly.py |
245 |
33.38 |
-35.63% | intrahost.py |
337 |
19.03 |
-63.72% | read_utils.py |
408 |
13.98 |
-75.24% | taxon_filter.py |
ID | Job ID | Ran | Files | Coverage | |
---|---|---|---|---|---|
1 | 3467.1 | 39 |
44.29 |
Travis Job 3467.1 | |
2 | 3467.2 | 39 |
44.18 |
Travis Job 3467.2 | |
3 | 3467.3 (TRAVIS_ACCESS_TOKEN_FOR_OTHER_REPO=[secure]) | 39 |
43.79 |
Travis Job 3467.3 |
Coverage | ∆ | File | Lines | Relevant | Covered | Missed | Hits/Line |
---|