511
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Ran 25 Jul 2014 07:21PM UTC

Jobs 1

Files 57

Run time 28s

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Build # 511

Build Type

push

travis-ci

Committed by

MauricioCarneiro

Commit Message

Variant: read api for format field strings

There was a bug with the implementation that wasn't concordant with how
htslib parses the strings in the bcf1_t structure. It now works by
checking for bcf_string_vector_end values to separate the strings, and
skips blocks to find the values for every sample using the fixed length
blocks as defined by bcf_fmt_t->n.

Support for vector of strings per sample is not yet agreed upon in the
VCF/BCF spec, so comma separated strings will be treated as a single
string by htslib and thus by Gamgee.

* string type number of bytes per value is reported by fmt->n (weirdly)
* make format utility functions not inline (too big to inline)
* add tests for variable length strings across samples
* add functional tests for iterators of VariantField<VariantFieldValue<string>>

fixes #78

Run Details

755 of 1054 relevant lines covered (71.63%)

63.23 hits per line

Jobs

ID	Job ID	Ran	Files	Coverage
1	511.1	25 Jul 2014 07:21PM UTC	0	71.63	Travis Job 511.1

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