zhanglab / psamm / 320

Builds Branch Commit Type Ran Committer Via Coverage
320 fluxcheck-reduce-lp fluxcheck: Use flux bounds to determine inconsistency by default Adds an option --reduce-lp to enable the previous behavior where the number of LP problems were reduced. The new method was determined to be faster with the Cplex solver. push jonls travis-ci pending completion   set done
319 cplex-solve-without-scaling cplex: Disable scaling when infeasible with scaling Cplex may report a problem as infeasible with scaling. In this case, it was recommended to try solving the problem without scaling. It may also help to increase the feasibility tolerance in such... push jonls travis-ci pending completion   set done
318 develop fluxcheck: Fail if tfba and fastcore are selected simultaneously push jonls travis-ci pending completion   set done
317 develop Merge branch 'fastcore-reuse-solver' into develop push jonls travis-ci pending completion   set done
316 fastcore-reuse-solver fastcore: Speed up fastcore/fastcc by reusing the LP problem This creates a new class FastcoreProblem subclassing FluxBalanceProblem. The class has additional methods lp7(), lp10() and find_sparse_mode(). This allows one underlying LP problem to ... push jonls travis-ci pending completion   set done
315 tab-based-export removed xlsx writer import from table based export push keitht547 travis-ci pending completion   set done
314 develop removed xlsx writer import from table based export Pull #40 keitht547 travis-ci pending completion   set done
313 develop fixed line length in line 115 in table.py Pull #40 keitht547 travis-ci pending completion   set done
311 develop added in exception for xlsx writer if module is not installed Pull #40 keitht547 travis-ci pending completion   set done
309 develop line lenth fixes in table.py file for parsers Pull #40 keitht547 travis-ci pending completion   set done
307 develop fixed the issues with whitespaces and blank lines in file Pull #40 keitht547 travis-ci pending completion   set done
305 develop fluxanalysis: Make consistency check more efficient Changes consistency check to only fetch the flux of reactions that are in the subset of reactions to check. This speeds up the check significantly because much of the time was spent fetching flu... push jonls travis-ci pending completion   set done
304 develop added support for exporting model information to an xlsx format Pull #40 keitht547 travis-ci pending completion   set done
302 develop made parsers generalized for use with user defined properties Pull #40 keitht547 travis-ci pending completion   set done
300 develop Merge branch 'print-solve-time' into develop push jonls travis-ci pending completion   set done