ghga-de / ghga-registry-service

88%

Build Type

push

github

Committed by web-flow

Commit Message

Annex UOS (GSI-2254) (#3)

* Commit most code adaptations

* Bring in UOS tests

* Add StudyRegistry class

* Add upload orchestrator unit tests

* Add model and UCS client unit tests

* Add unit tests for the audit logger

* Add unit tests for the access client

* Bring in all UOS http api unit tests

* Bring other aspects into line with latest version of spec

* Do a template update

* Change AltAccession DTO to event fn to match spec

* Fix test

* Revert to FileAccessionMapping schema and remove AltAccessions

* Make todo more specific

* Split out upload box router

* Split out upload grants router

* Add box state and box version to GrantWithBoxInfo

* Shorten field name on AccessionMapRequest

* Fix a doc string

* Rename UploadOrchestrator to RDUBManager everywhere

* StudyRegistry -> GHGARegistry everywhere except filenames

* Decompose params for submit_accession_map

* Decompose request param in box update method for consistency

* Rename test file

* Rename orchestrator files to rdub_manager

* Rename study_registry files to ghga_registry

* Clean up some comments

* Fix FUB version in UCS call - was off by 1

* Run 'update_all'

* Add descriptions to new grant model fields

* Get template updates and overwrite CI check changes

* update all

Coverage Stats

814 of 889 new or added lines in 29 files covered. (91.56%)

3 existing lines in 1 file now uncovered.

890 of 1006 relevant lines covered (88.47%)

0.88 hits per line