pirl-unc / tcrsift / 30460683413

Builds Branch Commit Type Ran Committer Via Coverage
30460683413 main 3.21.0: clarify workflows and add multi-sample TIL prioritization (#356) push GitHub github
85.17
30460265934 docs/til-workflow-clarity Merge 0c5a80530 into 76443ccc4 Pull #356 GitHub github
85.17
28969934137 main 3.20.0: γδ/αβ-CD8 disaggregation relabel_fn + byte-faithful refine_cluster re-embed (#351) (#355) #351 rides on refine_cluster, but as shipped in 3.19.0 the primitive delegated its re-embed to embed_cells — which drops MT/receptor genes, runs fil... push web-flow github
85.16
28969573378 gd-cd8-disaggregation-351 Merge 61a21f489 into a13fc82f7 Pull #355 web-flow github
85.16
28968419181 main 3.19.0: refine_cluster recovery-pass primitive (#352) (#354) Re-embed one compartment on its own Pearson residuals, sub-cluster it, and relabel each sub-cluster via a caller callback — the shared engine behind hand-rolled disaggregation passes (γ... push web-flow github
85.13
28968106980 refine-cluster-352 Merge a9f2108a2 into b4ad931e2 Pull #354 web-flow github
85.13
28967283870 main 3.18.0: union oncoref clinical-target CTAs into tumor_override's default panel (#350) (#353) Closes #350. push web-flow github
85.1
28966972186 tumor-override-clinical-cta-default Merge eff13b705 into d7dccf2ae Pull #353 web-flow github
85.1
28898564723 main 3.17.0: hard-depend on oncoref + default tumor_override panel to its CTAs (#340 follow-up) (#349) tumor_override defaults gene_set to oncoref.CTA_gene_names(). push web-flow github
85.1
28898174976 oncoref-cta-default Merge 937d00778 into 8a99af1ee Pull #349 web-flow github
85.1
28896874186 main 3.16.0: tumor_override factory for cross-cancer h37-style typing (#340 follow-up) (#348) Adds tcrsift.annotate_cells.tumor_override. push web-flow github
85.09
28896587486 tumor-override-factory Merge 189a4ca18 into 49a6c6486 Pull #348 web-flow github
85.09
28896380582 main 3.15.0: rename the atlas CLI command group to `cells` (#342 follow-up) (#347) Renames the single-cell CLI group atlas → cells. push web-flow github
85.09
28896090411 rename-atlas-cli-to-cells Merge a939674a6 into 5a3ee7cbd Pull #347 web-flow github
85.09
28895115897 main 3.14.0: atlas qc/embed/annotate CLI subcommands for the single-cell GEX path (#342) (#346) Closes #342. push web-flow github
85.09