pirl-unc / tcrsift / 24795341689

Builds Branch Commit Type Ran Committer Via Coverage
24795341689 main Merge pull request #2 from pirl-unc/codex/fix-logistic-filtering-and-optional-deps [codex] Fix logistic filtering and optional dependencies push web-flow github
70.54
24793440596 codex/fix-logistic-filtering-and-optional-deps Merge 62a13453e into 22dcd74d4 Pull #2 web-flow github
70.54
24050707253 main Remove pandas upper bound cap push iskandr github
70.37
24050505625 main Bump to 0.2.6: require numpy>=2.0.0 push iskandr github
70.37
23099143012 add-enrichment-branch Merge aecdaa88b into 855e12703 Pull #1 web-flow github
70.41
21916519681 main Add til-select v2 CSV compatibility and bump version push iskandr github
70.37
21873489947 main Add til-select workflow for TIL-only prioritization push iskandr github
72.88
21766868105 main Align TIL workflows, optional annotation, and docs/CLI consistency push iskandr github
70.56
21716777488 main Add tests for GEX augmentation push iskandr github
70.48
21386154377 main Fix pipeline issues and add tests push iskandr github
68.45
21264988424 main Update develop.sh to activate venv and use uv Checks for active venv, local .venv, or local venv directory. Creates a new .venv with uv if none found. Uses uv pip for editable install when available. Co-Authored-By: Claude Opus 4.5 <noreply@anth... push iskandr github
64.52
21262765240 main Add safe calculation utilities and improve input validation - Add safe_divide, safe_percentage, safe_mode utilities to validation.py to prevent division-by-zero errors across the codebase - Add validate_cdr3_dataframe for bulk CDR3 sequence val... push iskandr github
64.52
21220620640 main Add tests for load_cellranger_gex and load_sample functions - TestLoadCellrangerGex: Basic loading, QC metrics, filter flags, error handling - TestLoadSample: Combined GEX+VDJ loading, VDJ-only loading, metadata propagation - Created mock 10x mat... push iskandr github
64.05
21217739954 main Fix loader tests to match actual function behavior - _extract_tcell_markers adds all marker columns with 0 for missing genes - combine_gex_and_vdj returns all GEX cells with VDJ columns merged (left join) - Loader coverage improved from 19% to 49... push iskandr github
62.34
21194649738 main Fix import: use _pivot_vdj_by_barcode instead of non-existent pivot_vdj_to_cells Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com> push iskandr github
60.27