pirl-unc / tcrsift / 28898564723

Builds Branch Commit Type Ran Committer Via Coverage
28898564723 main 3.17.0: hard-depend on oncoref + default tumor_override panel to its CTAs (#340 follow-up) (#349) tumor_override defaults gene_set to oncoref.CTA_gene_names(). push web-flow github
85.1
28898174976 oncoref-cta-default Merge 937d00778 into 8a99af1ee Pull #349 web-flow github
85.1
28896874186 main 3.16.0: tumor_override factory for cross-cancer h37-style typing (#340 follow-up) (#348) Adds tcrsift.annotate_cells.tumor_override. push web-flow github
85.09
28896587486 tumor-override-factory Merge 189a4ca18 into 49a6c6486 Pull #348 web-flow github
85.09
28896380582 main 3.15.0: rename the atlas CLI command group to `cells` (#342 follow-up) (#347) Renames the single-cell CLI group atlas → cells. push web-flow github
85.09
28896090411 rename-atlas-cli-to-cells Merge a939674a6 into 5a3ee7cbd Pull #347 web-flow github
85.09
28895115897 main 3.14.0: atlas qc/embed/annotate CLI subcommands for the single-cell GEX path (#342) (#346) Closes #342. push web-flow github
85.09
28894786976 atlas-cli-subcommands Merge 497e418ce into 02e8e9e0f Pull #346 web-flow github
85.09
28894330785 main 3.13.0: solid-tumor cell-type preset + atlas doc; flag PBMC-oriented defaults (#340) (#345) Closes #340. push web-flow github
85.01
28894039734 solid-tumor-celltype-preset-and-atlas-doc Merge d3757a17e into b16faa374 Pull #345 web-flow github
85.01
28893721623 main 3.12.0: annotate_cells injectable T/B-state registries (#337) + any-marker rescue gate (#339) (#344) Closes #337, closes #339. push web-flow github
85.01
28893457207 annotate-injectable-states-and-rescue Merge 5512976df into 976d012f8 Pull #344 web-flow github
85.01
28893016555 main 3.11.0: cell_qc_funnel preserves caller pct_counts_mt (#338) + accepts TCRsiftConfig (#341) (#343) Closes #338, closes #341. push web-flow github
84.98
28892694610 qc-pct-mt-and-config-unwrap Merge 42007d56f into dc76f9bde Pull #343 web-flow github
84.98
28878579906 main 3.10.0: cell_qc_funnel None disables a bound + gentler defaults + loud cull warning (#336) None now disables a threshold (via _UNSET sentinel, matching scanpy); context-dependent bounds (max_genes/max_counts/min_mito floor) default OFF so an unse... push web-flow github
84.98