cokelaer / variant_calling / 24126477514

Builds Branch Commit Type Ran Committer Via Coverage
24126477514 main Simplify variant_calling apptainer workflow to match local working setup - Remove image cache (was potentially causing issues) - Remove deprecated --use-apptainer flag - Remove --annotation-file (not needed for variant_calling) - Add --force and ... push cokelaer github
80.72
24125178156 main Fix variant_calling apptainer CI: add --use-apptainer flag and print error logs - Add missing --use-apptainer flag to sequana_variant_calling command - Add debug step to print snpeff_add_locus_in_fasta.log on failure to reveal the actual error ... push cokelaer github
80.72
24103555153 main Fix CI push cokelaer github
80.72
24102625356 main update to use sequana-wrappers.shells push cokelaer github
80.72
21554073080 main fix python version for CI push cokelaer github
80.72
20630149192 main fix python version for CI push cokelaer github
80.72
19807795405 main fix python version for CI push cokelaer github
80.72
19138918844 main fix python version for CI push cokelaer github
80.72
19138758893 main update python version push cokelaer github
80.72
8104569269 main add minimap2 push cokelaer github
85.63
7734285903 main add minimap2 push cokelaer github
85.63
7697459280 main add minimap2 push cokelaer github
85.63
7697256378 main pin pulp for the testing push cokelaer github
85.63
7488527941 main Fix joint calling regression push cokelaer github
88.03
7373619141 main Fix coverage (regression) and add a test push cokelaer github
88.03