umich-brcf-bioinf / Jacquard / 787

Builds Branch Commit Type Ran Committer Via Coverage
787 develop ex-279 (cgates/dkriti): Adjust expand to give friendly error message if input not VCF. push dkriti travis-ci pending completion   set done
786 develop ex-274 (dkriti/cgates) updating include_all in merge push dkriti travis-ci pending completion   set done
785 ex-266_simplify_merge_implementation ex-274 (cgates/dkriti) updating include all push dkriti travis-ci pending completion   set done
784 ex-266_simplify_merge_implementation ex-266 (cgates/dkriti) continued with tag registry push dkriti travis-ci pending completion   set done
783 ex-266_simplify_merge_implementation ex-266 (cgates/dkriti): Adjusted test to pass in python3 push dkriti travis-ci pending completion   set done
782 ex-266_simplify_merge_implementation ex-266 (jebene/dkriti/cgates) began work on TagRegistry push jebene travis-ci pending completion   set done
781 ex-266_simplify_merge_implementation ex-266 (dkriti/jebene): continued refactor of merge push jebene travis-ci pending completion   set done
780 ex-266_simplify_merge_implementation ex-266 (jebene/dkriti) began changing the signature of MergeVcfReader() push jebene travis-ci pending completion   set done
779 ex-266_simplify_merge_implementation (jebene) minor changes to cleanup pylint push jebene travis-ci pending completion   set done
778 ex-266_simplify_merge_implementation ex-266 (jebene/dkriti) rewrote disambiguate_format_tags, began drafting new architecture for create_merge_vcf_readers push dkriti travis-ci pending completion   set done
777 ex-266_simplify_merge_implementation ex-266 (jebene/dkriti) minor change to make travis pass on 3.4 push dkriti travis-ci pending completion   set done
776 ex-266_simplify_merge_implementation ex-266 (jebene) modified _validate_consistent_samples to take vcf_readers instead of file_readers push dkriti travis-ci pending completion   set done
775 ex-266_simplify_merge_implementation ex-266 (jebene/dkriti) MergeVcfReader now modifies (on initialization) metaheaders and format tags to only contain those which match the desired regular expression. Removed depricated methods push dkriti travis-ci pending completion   set done
774 develop ex-251 (cgates): Minor adjustment to help messages push cgates travis-ci pending completion   set done
773 ex-266_simplify_merge_implementation ex-266 (jebene/dkriti) Made MergeVcfReader understand which subset of format tags to keep; it modifies the format_tags in each vcf_record push dkriti travis-ci pending completion   set done