broadinstitute / viral-ngs / 757

Builds Branch Commit Type Ran Committer Via Coverage
757 ct-add-clumpify add missing import push tomkinsc travis-ci-com pending completion   set done
755 ct-add-clumpify dedup prior to metagenomics classification in WDL workflows Pull #970 web-flow travis-ci-com pending completion   set done
754 ct-add-clumpify dump dx-toolkit version and update URL to reflect new source DNAnexus seems to have replaced their wiki with a new documentation page ( https://documentation.dnanexus.com/downloads ) and the old download URLs along with it Pull #970 web-flow travis-ci-com pending completion   set done
753 ct-add-clumpify dump dx-toolkit version and update URL to reflect new source DNAnexus seems to have replaced their wiki with a new documentation page ( https://documentation.dnanexus.com/downloads ) and the old download URLs along with it push tomkinsc travis-ci-com pending completion   set done
756 ct-add-clumpify dedup prior to metagenomics classification in WDL workflows push tomkinsc travis-ci-com pending completion   set done
752 is-dx-benchmarks update cromwell to 43 push notestaff travis-ci-com pending completion   set done
745 is-dx-benchmarks update dxpy push notestaff travis-ci-com pending completion   set done
751 ct-add-clumpify reduce clumpify max_mismatches 5->3 Pull #970 web-flow travis-ci-com pending completion   set done
750 ct-add-clumpify reduce clumpify max_mismatches 5->3 push tomkinsc travis-ci-com pending completion   set done
749 ct-add-clumpify replace unicode apostrophe Pull #970 web-flow travis-ci-com pending completion   set done
747 ct-add-clumpify switch from mvicuna to clumpify-based dedup in taxon_filter.py deplete replace mvicuna-based read deduplication in taxon_filter.py::deplete() with clumpify-based deduplication that occurs farther upstream in advance of BWA-based depletion; add de... Pull #970 web-flow travis-ci-com pending completion   set done
748 ct-add-clumpify replace unicode apostrophe push tomkinsc travis-ci-com pending completion   set done
746 ct-add-clumpify switch from mvicuna to clumpify-based dedup in taxon_filter.py deplete replace mvicuna-based read deduplication in taxon_filter.py::deplete() with clumpify-based deduplication that occurs farther upstream in advance of BWA-based depletion; add de... push tomkinsc travis-ci-com pending completion   set done
741 is-dx-benchmarks Merge branch 'master' into is-dx-benchmarks push notestaff travis-ci-com pending completion   set done
744 ct-add-clumpify pass JVMmemory; add read_utils.rmdup_clumpify_bam; dedup_bam WDL task pass JVMmemory to bbmap and clumpify; add rmdup_clumpify_bam to read_utils.py; change TestRmdupUnaligned unit tests for bbmap to use read_utils.py::rmdup_clumpify_bam; add dedu... Pull #970 web-flow travis-ci-com pending completion   set done