umich-brcf-bioinf / ExomeSeqPipeline / 182

Builds	Branch	Commit	Type	Ran	Committer	Via	Coverage
182	develop	EX-85 (jebene/cgates) fixed bug in merge so that Mult_Alts are handled correctly.	push	01 Oct 2014 02:35PM UTC	jebene	travis-ci	pending completion   set done
180	develop	EX-85 (jebene kmeng) Fixed merge merge_samples() method to handle Mult_Alts.	push	29 Sep 2014 07:52PM UTC	jebene	travis-ci	pending completion   set done
179	develop	(jebene): modified consensus.py so that z-score calculation wasn't finding population mean and std redundantly. it's MUCH faster now	push	29 Sep 2014 01:50PM UTC	jebene	travis-ci	pending completion   set done
178	develop	ex-48 - (jebene/kmeng): refactored merge and expand to fix segfualt bug	push	26 Sep 2014 09:09PM UTC	jebene	travis-ci	pending completion   set done
176	develop	(jebene): fixed bug in consensus - averages are now rounded to 2 decimal places. started debugging expand segmentation fault	push	24 Sep 2014 02:58PM UTC	jebene	travis-ci	pending completion   set done
175	develop	EX-64 (cgates kmeng) Created vcfrecord object to handle vcf record lines.	push	23 Sep 2014 07:12PM UTC	kmeng	travis-ci	pending completion   set done
174	develop	(jebene/cgates/kmeng): edited expand.py	push	22 Sep 2014 09:12PM UTC	jebene	travis-ci	pending completion   set done
173	develop	ex-76 (jebene) - normalize now works with MuTect (copies input VCF files ot output dir)	push	22 Sep 2014 06:12PM UTC	jebene	travis-ci	pending completion   set done
172	develop	ex-19 (jebene) - edited Strelka meta-headers, added tag.hander meta-headers to correpsonding VCFs, remove output dir if fails	push	22 Sep 2014 05:45PM UTC	jebene	travis-ci	pending completion   set done
171	develop	(jebene): fixed consensus.py bug - now looks for jacquard_utils.jq_somatic_tag rather than JQ_SOM	push	22 Sep 2014 04:46PM UTC	jebene	travis-ci	pending completion   set done
170	develop	(jebene) - fixed expand.py format and info tag expansion	push	22 Sep 2014 04:06PM UTC	jebene	travis-ci	pending completion   set done
169	develop	Merge branch 'develop' of git@github.com:umich-brcf-bioinf/ExomeSeqPipeline.git into develop	push	22 Sep 2014 03:22PM UTC	cgates	travis-ci	pending completion   set done
168	develop	(cgates): added lightweight wrapper to run directly from source tree	push	22 Sep 2014 02:22PM UTC	Chris Gates	travis-ci	pending completion   set done
167	develop	Update README.md	push	22 Sep 2014 03:25AM UTC	cgates	travis-ci	pending completion   set done
166	develop	Update README.md	push	22 Sep 2014 03:11AM UTC	cgates	travis-ci	pending completion   set done