GuyTeichman / RNAlysis / 4113959643

Builds Branch Commit Type Ran Committer Via Coverage
4113959643 development Added reads-per-kilobase-million (RPKM) and transcripts-per-million (TPM) normalization methods (CountFilter.normalize_to_rpkm() and CountFilter.normalize_to_tpm()) push GuyTeichman github pending completion   set done
4113592721 development implemented get_genomic_feature_lengths; refactored functions into the new utils.genome_annotation.py module push GuyTeichman github pending completion   set done
4105002192 development added GTF validation to io.map_gene_to_attr and io.map_transcripts_to_genes push GuyTeichman github pending completion   set done
4104867155 development Pipelines that contain consecutive clustering/splitting functions will now return their outputs in a clearer format; clustering functions now return Filter objects in tuples instead of lists push GuyTeichman github pending completion   set done
4103532597 development fixup! implemented tests for CountFilter.differential_expression_deseq2() and CountFilter.differential_expression_limma_voom() push GuyTeichman github pending completion   set done
4102560500 development implemented tests for CountFilter.differential_expression_deseq2() and CountFilter.differential_expression_limma_voom() push GuyTeichman github pending completion   set done
4098551251 development added graphical interface for Limma-Voom differential expression push GuyTeichman github pending completion   set done
4097974770 development implemented functions for generating and executing Limma-Voom pipeline analyses push GuyTeichman github pending completion   set done
4097429272 development added citation info for bowtie2, featurecounts, and limma-voom push GuyTeichman github pending completion   set done
4096348552 development fixup! You can now select which databases to display in the right-click quick-search menu, using the settings menu. push GuyTeichman github pending completion   set done
4092176361 development fixup! enrichment.FeatureSet now inherits from Python set base class push GuyTeichman github pending completion   set done
4075459995 development function selection combo-box now displays functions' readable name instead of programmatic name push GuyTeichman github pending completion   set done
4067700229 V3.4.2 updated documentation push GuyTeichman github pending completion   set done
4067700047 master updated documentation push GuyTeichman github pending completion   set done
4067578646 development Bump version: 3.4.0 → 3.4.1 push GuyTeichman github pending completion   set done