galantelab / sideRETRO / 343

Builds Branch Commit Type Ran Committer Via Coverage
343 gz UPDATE: fasta.c: Use 'gz' interface push thiago-miller travis-ci pending completion   set done
342 gz UPDATE: gff.c: Use 'gz' interface push thiago-miller travis-ci pending completion   set done
340 gz ADD: gz.c: Add wrapper for libz push thiago-miller travis-ci pending completion   set done
339 dev ADD: main.c (print_citation): Show citation Add citation option. Print it in BibTeX format push thiago-miller travis-ci pending completion   set done
338 dev FIX: vcf.c (genotype_likelihood): Be conservative Restructure the genotyping. Compare doubles using 'fequal' and when in case of equality, follow the table: HOR HET HOA GENOTYPE 2 2 2 0/1 2 2 1 0/0 2 1 2 0/0 1 2 2 0/1 push thiago-miller travis-ci pending completion   set done
337 dev ADD: utils.c (fequal): Compare float points push thiago-miller travis-ci pending completion   set done
336 dev UPDATE: process_sample.c, docs/usage.rst: Help Update the argument 'annotation-file' help. Explain about the fields required and about the lines that are filtered push thiago-miller travis-ci pending completion   set done
335 dev FIX: gff.c (gff_read): Spaces into GTF attr Solve bug when reading GTF, possibly GFF3 as well, and there is a space into the attr value: gene_name "My gene name". Now, the attr value will correctly split it as: key=gene_name and value='My gene name' push thiago-miller travis-ci pending completion   set done
334 docs UPDATE: docs/result.rst: Start of text/imgs/codes push thiago-miller travis-ci pending completion   set done
332 dev UPDATE: docs/result.rst: Start of text/imgs/codes push thiago-miller travis-ci pending completion   set done
331 dev UOPDATE: docs/result.rst: Start of text/imgs/codes push thiago-miller travis-ci pending completion   set done
330 dev FIX: .travis.yml: meson version meson 0.55.0 fails when the option '-Db_coverage=true' is set push thiago-miller travis-ci pending completion   set done
322 dev FIX: abnormal.c (dump_alignment): (long) core.pos core.pos, in more recent versions of htslib, is declared as long int, and not as int. So, cast core.pos to long int, in order to avoid gcc warnings push thiago-miller travis-ci pending completion   set done
321 dev FIX: abnormal.c (sam_rewind): Working with CRAM push thiago-miller travis-ci pending completion   set done
320 master Version 0.14.1 push thiago-miller travis-ci pending completion   set done