zyxue / kleat / 145

Builds Branch Commit Type Ran Committer Via Coverage
145 dev use a large chunksize when aggregate_polya_evidence in parallel Because each grouped seqname|strand|clv only has a related small number of supports, and sending small data for many times is expensive. For UHRC1 sample, roughly increasing chunksi... push zyxue travis-ci pending completion
144 tcga-run-4 hotfix for gen_tmp_output to distinguish output from parallel runs push zyxue travis-ci pending completion
143 dev hotfix for gen_tmp_output to distinguish output from parallel runs push zyxue travis-ci pending completion
142 master hotfix for gen_tmp_output to distinguish output from parallel runs push zyxue travis-ci pending completion
141 master hotfix for gen_tmp_output to distinguish output from parallel runs push zyxue travis-ci pending completion
140 master hotfix for gen_tmp_output to distinguish output from parallel runs push zyxue travis-ci pending completion
139 tcga-run-4 bug fix after renaming output header: use more key=val when gen_clv_record push zyxue travis-ci pending completion
137 master bug fix after renaming output header: use more key=val when gen_clv_record push zyxue travis-ci pending completion
138 dev bug fix after renaming output header: use more key=val when gen_clv_record push zyxue travis-ci pending completion
136 new-header updated KARBOR_FEATURE_COLS in ml_utils.py push zyxue travis-ci pending completion
135 dev use link.calc_ctg_clv in blank.py push zyxue travis-ci pending completion
134 dev factored out calc_ctg_clv in suffix.py push zyxue travis-ci pending completion
133 dev removed deprecated TODO comment above infer_query_sequence push zyxue travis-ci pending completion
132 dev factored out kleat/polya.py push zyxue travis-ci pending completion
131 dev fixed tests/test_visaln.py push zyxue travis-ci pending completion