tgbugs / pyontutils / 1135

Builds Branch Commit Type Ran Committer Via Coverage
1135 master outline of tests for graph changes push tgbugs travis-ci pending completion   set done
1134 master oboio simplify how we deal with robot format as a result running obo-io uberon_edit.obo -nor now roundtrips with no changes (woo!) don't try to sort the trailing qualifiers just don't change the order we got them in, should probably add another ... push tgbugs travis-ci pending completion   set done
1133 master oboio use paths, try to match robot format as far as I can tell the robot serializer is stable but not deterministic for trailing qualifiers, most but not all of the other issues are fixed, so I think the only sane thing to do at this point is to... push tgbugs travis-ci pending completion   set done
1132 master oboio --overwrite added and fix comment parsing string.count('"') % 2 == 1 is a better way to count unescaped strings of course escaped string start/stop chars will still break this completely also don't use __str__ for serialization of OboFile ... push tgbugs travis-ci pending completion   set done
1131 master work on neurondm simple, updates to combinators to support using the *Legacy classes it is possible to parse the old python exports and serialize to owl almost everything except for LogicalPhenotypes, that is mostly an issue with figuring out the... push tgbugs travis-ci pending completion   set done
1130 master oboio improve OboFile.write, prevent klobbering of tags with dashes added a test to check for issues related to tags with dashes push tgbugs travis-ci pending completion   set done
1129 master closed namespaces fix dcterms since 308ing the purl broke rdflib see also https://github.com/RDFLib/rdflib/issues/1040 push tgbugs travis-ci pending completion   set done
1128 master fma slim remove unneeded import push tgbugs travis-ci pending completion   set done
1127 master nifstd_tools add fma_slim.py push tgbugs travis-ci pending completion   set done
1126 master setup.py bump augpathlib dep push tgbugs travis-ci pending completion   set done
1125 master curie map add scicrunch resolver with https as default for RRID: push tgbugs travis-ci pending completion   set done
1124 master fixed partial conversion of progenitors to types push tgbugs travis-ci pending completion   set done
1123 master small set of stream types to make progenitors easier to access in advance of getting gzipped content working in OntResIri for chebi push tgbugs travis-ci pending completion   set done
1122 master cmb.Ontology, clif.Options.setup, BetterNSM.populate_from Options.setup implements the steps that I nearly always go through manually to set up the options, it simply replicates the docopt api except that it calls both docopt and parse_defaults a... push tgbugs travis-ci pending completion   set done
1121 master neurondm commonName simpleLabel simpleLocalLabel push tgbugs travis-ci pending completion   set done