sartorlab / chipenrich / 41

Builds Branch Commit Type Ran Committer Via Coverage
41 master <a href="https://github.com/sartorlab/chipenrich/commit/93f4c6f03">Remove test for geneset size within test_*.R files * Geneset filtering handling changed in </a><a class="double-link" href="https://github.com/sarto... push rcavalcante travis-ci pending completion   set done
40 master Clarify method references * Some checks were still based on method names from development, e.g. 'nbspeed' and 'nb'. * Removed continuity correction from polyenrich, since it isn't actually needed. push rcavalcante travis-ci pending completion   set done
39 master By default, use faster versions of chipenrich and polyenrich * chipenrich -> test_gam_fast * polyenrich -> test_gam_nb_fast * chipenrich_slow -> test_gam and is a HIDDEN METHOD * polyenrich_slow -> test_gam_nb and is a HIDDEN METHOD * Made chipap... push rcavalcante travis-ci pending completion   set done
38 master Bugfix: filter_genesets() * Really want >= min_geneset_size, and change unit tests accordingly. push rcavalcante travis-ci pending completion   set done
36 master Bump version in preparation for Bioc v2.0.0 * Update NEWS to subsume all recent devel updates into 2.0.0 updates. push rcavalcante travis-ci pending completion   set done
35 master Bugfix: Mistakenly removed peak_genes needed for QC plots * Wasn't caught because, in testing, @leetaiyi often sets the QC flag to FALSE, and for the vignette we use teh plot_spline_length function directly, which retained the line. * Thanks to S... push rcavalcante travis-ci pending completion   set done
34 master Add unit tests to chipenrich() function push rcavalcante travis-ci pending completion   set done
33 master Add more unit tests * supported_*() functions are tested * randomize_*() functions are tested * Add back reading message in read_bed() as per @leetaiyi 's request. * Refactor custom geneset handling in chipenrich() to be more like custom locus de... push rcavalcante travis-ci pending completion   set done
31 master Improve functions in utils.R and setup.R * Document functions even though they're internal, maybe they won't always be! * Increase tests! Already noticed some problems once I wrote some tests. * Some refactoring to simplify code. push rcavalcante travis-ci pending completion   set done
32 master Improve functions in utils.R and setup.R * Document functions even though they're internal, maybe they won't always be! * Increase tests! Already noticed some problems once I wrote some tests. * Some refactoring to simplify code. push rcavalcante travis-ci pending completion   set done
30 master countenrich renamed to polyenrich * The method developed as countenrich will be released as polyenrich. * Future commit should break it out into a function similar to chipenrich. push rcavalcante travis-ci pending completion   set done