cbmi / varify / 602

Builds Branch Commit Type Ran Committer Via Coverage
602 issue-236 Sort genes by effect impact in gene rank command This also updates the test to be more general with regard to checking that scores were added. Signed-off-by: Don Naegely <naegelyd@gmail.com> push naegelyd travis-ci pending completion   set done
601 master Sort genes by effect impact in gene rank command This also updates the test to be more general with regard to checking that scores were added. Signed-off-by: Don Naegely <naegelyd@gmail.com> Pull #244 naegelyd travis-ci pending completion   set done
597 issue-238 Only truncate once before updating frequencies This fixes a bug where we were only seeing the frequencies being updated for the last cohort in the list. This was a result of the placement of the truncate command. Previously, the truncation happen... push naegelyd travis-ci pending completion   set done
598 master Only truncate once before updating frequencies This fixes a bug where we were only seeing the frequencies being updated for the last cohort in the list. This was a result of the placement of the truncate command. Previously, the truncation happen... Pull #243 naegelyd travis-ci pending completion   set done
595 master Optimize the SolveBio ClinVar query to prevent slow variant resource requests Remove the by-gene filter to narrow down the result sets and return only the first 10 results from the query. Adds the total result count to the clinvar dictionary in t... Pull #241 davecap travis-ci pending completion   set done
593 master Merge pull request #235 from cbmi/issue-205 Fix cohort popover sample links push bruth travis-ci pending completion   set done
588 master Disable assessment tests Currently, the assessment tests run fine when run by themselves but they crash when run as the test suite as a whole. This is not critical right now so we are disabling assessment tests in master, this can be worked out i... push naegelyd travis-ci pending completion   set done
578 master Add tests for Assessment resources Signed-off-by: Sheik Hassan <solergiga@yahoo.com> push naegelyd travis-ci pending completion   set done
577 master Merge pull request #220 from muslimgiga/master Add tests for the assessment resources push naegelyd travis-ci pending completion   set done
576 master Fixed falke8 and added empty models __init__ file Signed-off-by: Sheik Hassan <solergiga@yahoo.com> Pull #220 muslimgiga travis-ci pending completion   set done
574 master Merge pull request #227 from cbmi/issue-226 Fix error when checking for solvebio clinvar data push bruth travis-ci pending completion   set done
567 master Fix flake8 issue in allele freqs command Signed-off-by: Don Naegely <naegelyd@gmail.com> push naegelyd travis-ci pending completion   set done
562 master SolveBio client will raise an exception on error rather than just return None; use the Dataset resource rather than a wrapper class for querying Signed-off-by: David Caplan <dcaplan@gmail.com> Pull #225 davecap travis-ci pending completion   set done
560 master Reset cohort_variant when updating allele frequencies Clear cohort_variant table and restart cohort_variant_id_seq sequence when updating allele frequencies to prevent the 'integer out of range' exception from happening during nightly recalculati... Pull #223 ryanjohara travis-ci pending completion   set done
558 master Reset cohort_variant when updating allele frequencies Clear cohort_variant table and restart cohort_variant_id_seq sequence when updating allele frequencies to prevent the 'integer out of range' exception from happening during nightly recalculati... Pull #223 ryanjohara travis-ci pending completion   set done