• Home
  • Features
  • Pricing
  • Docs
  • Announcements
  • Sign In

uc-cdis / gen3-workflow
84%
master: 85%

Build:
Build:
LAST BUILD BRANCH: feat/_IMAGE_PULL_POLICY
DEFAULT BRANCH: master
Repo Added 03 Jan 2025 09:53PM UTC
Token Bdx20hgFX8yEaWNhixWLyvLhd3HtCW1Z3 regen
Build 549 Last
Files 16
Badge
Embed ▾
README BADGES
x

If you need to use a raster PNG badge, change the '.svg' to '.png' in the link

Markdown

Textile

RDoc

HTML

Rst

LAST BUILD ON BRANCH 0.3.0
branch: 0.3.0
CHANGE BRANCH
x
Reset
Sync Branches
  • 0.3.0
  • 0.1.0
  • 0.2.0
  • 0.3.1
  • 2026.02
  • 2026.03
  • 2026.04
  • 2026.05
  • 2026.06
  • 2026.07
  • 2026.08
  • ClientDisconnect-499
  • authz-refactor
  • cache-bucket
  • chore/add_aws_utils_unit_test
  • chore/add_awshelper_yaml_kind_setup
  • chore/add_delete_object_s3
  • chore/add_gh_action_integration_tests
  • chore/add_helm_deployment_doc
  • chore/create_iam_role_for_worker_pods
  • chore/create_karpenter_resources
  • chore/delete_bucket_false
  • chore/delete_storage_bucket
  • chore/fix_metrics_endpoint
  • chore/fix_user_bucket_path
  • chore/kind-setup
  • chore/kubeapi_endpoints
  • chore/remove_eks_cluster_dependency
  • chore/remove_wool_add_req_lint_check
  • chore/skip_poetry_install_at_launch
  • chore/skip_poetry_install_upon_launch
  • chore/test_docker_build
  • chore/update_kind_ci
  • debug-chunk
  • debug-logs
  • debug-token
  • debug/add_s3_logs
  • debug/client_disconnect
  • debug/test_wf_branch
  • delete-objects-versions
  • dependabot/pip/alembic-1.14.1
  • dependabot/pip/alembic-1.15.1
  • dependabot/pip/alembic-1.15.2
  • dependabot/pip/authutils-6.2.6
  • dependabot/pip/authutils-7.2.7
  • dependabot/pip/boto3-1.35.92
  • dependabot/pip/boto3-1.35.97
  • dependabot/pip/boto3-1.36.11
  • dependabot/pip/boto3-1.36.16
  • dependabot/pip/boto3-1.36.2
  • dependabot/pip/boto3-1.36.21
  • dependabot/pip/boto3-1.36.6
  • dependabot/pip/boto3-1.37.13
  • dependabot/pip/boto3-1.37.18
  • dependabot/pip/boto3-1.37.23
  • dependabot/pip/boto3-1.37.4
  • dependabot/pip/boto3-1.37.9
  • dependabot/pip/boto3-1.42.97
  • dependabot/pip/botocore-1.42.97
  • dependabot/pip/botocore-1.43.20
  • dependabot/pip/botocore-1.43.24
  • dependabot/pip/botocore-1.43.29
  • dependabot/pip/botocore-1.43.34
  • dependabot/pip/botocore-1.43.36
  • dependabot/pip/botocore-1.43.40
  • dependabot/pip/botocore-1.43.46
  • dependabot/pip/botocore-1.43.51
  • dependabot/pip/botocore-1.43.56
  • dependabot/pip/fastapi-0.115.11
  • dependabot/pip/fastapi-0.115.12
  • dependabot/pip/fastapi-0.115.7
  • dependabot/pip/fastapi-0.115.8
  • dependabot/pip/fastapi-0.136.1
  • dependabot/pip/fastapi-0.136.3
  • dependabot/pip/fastapi-0.137.1
  • dependabot/pip/fastapi-0.138.0
  • dependabot/pip/fastapi-0.138.2
  • dependabot/pip/fastapi-0.139.0
  • dependabot/pip/fastapi-0.139.2
  • dependabot/pip/fastapi-0.140.6
  • dependabot/pip/gunicorn-25.3.0
  • dependabot/pip/gunicorn-26.0.0
  • dependabot/pip/moto-5.0.26
  • dependabot/pip/moto-5.0.27
  • dependabot/pip/moto-5.0.28
  • dependabot/pip/moto-5.1.1
  • dependabot/pip/moto-5.2.0
  • dependabot/pip/moto-5.2.1
  • dependabot/pip/moto-5.2.2
  • dependabot/pip/pip-8981c3388c
  • dependabot/pip/pip-c30c77f42d
  • dependabot/pip/pytest-8.3.5
  • dependabot/pip/pytest-9.1.1
  • dependabot/pip/pytest-asyncio-0.25.2
  • dependabot/pip/pytest-asyncio-0.25.3
  • dependabot/pip/pytest-asyncio-0.26.0
  • dependabot/pip/sqlalchemy-2.0.37
  • dependabot/pip/sqlalchemy-2.0.38
  • dependabot/pip/sqlalchemy-2.0.39
  • dependabot/pip/sqlalchemy-2.0.40
  • dependabot/pip/starlette-1.1.0
  • dependabot/pip/starlette-1.2.1
  • dependabot/pip/starlette-1.3.1
  • dependabot/pip/uvicorn-0.46.0
  • dependabot/pip/uvicorn-0.47.0
  • dependabot/pip/uvicorn-0.48.0
  • dependabot/pip/uvicorn-0.49.0
  • dependabot/pip/uvicorn-0.50.2
  • docs/user_facing_doc
  • feat/3.13
  • feat/_IMAGE_PULL_POLICY
  • feat/add_prometheus
  • feat/encrypt-and-lifecycle-pol
  • feat/plugin-support
  • feat/s3-bearer
  • feat/s3-endpoint
  • feat/s3-endpoint2
  • feat/s3Files
  • fix-400
  • fix-chunks
  • fix-minio-nextflow
  • fix-setup-storage-authz
  • fix/chunk
  • fix/iam_policy_document
  • fix/linting
  • fix/not-JSON-serializable
  • fix/pre-filter-task-list
  • fix/s3-calls
  • fix/s3Files_hotfixes
  • fix/support_other_bucket_regions
  • fix/verify_before_bucket_create
  • free-space
  • integration202602
  • integration202603
  • integration202604
  • integration202605
  • integration202606
  • integration202607
  • integration202608
  • integration_tests_on_kind
  • master
  • misc-improvements
  • misc-improvements-clean
  • multipart-support
  • no-reload
  • nss10-patch-1
  • nss10-patch-2
  • nss10-patch-3
  • paulineribeyre-patch-1
  • perf
  • range-header
  • retry-OperationAborted
  • retry-s3
  • stable
  • support-kind
  • tes-errs
  • test-minio-go
  • test/add_kms_info
  • test/allow_mock_auth
  • test/dummy_pr_to_test_netpols
  • test/plugin-support-with-logs
  • test/print-headers
  • ui
  • update-deps
  • update/authutils_8
  • wait-for-bucket

30 Jul 2026 06:04PM UTC coverage: 84.375% (+1.6%) from 82.729%
30568947099

push

github

web-flow
Add Amazon S3Files support for Gen3Workflow (#170)

*Enable bucket versioning
* Update EKS security group filter to use EKS group name
* Create dynamic IAM role for S3Files
* Add STORAGE_TYPE config variable, add documentation for s3files
* Make S3Files a configurable setup
* Make mount target provisioning a bgTask + Update docs
* Re-organize aws_utils into aws.bucket, aws.aws_utils, aws.clients.
* Add unit tests for S3Files
* Make security group field configurable and add docs on how to fetch them

972 of 1152 relevant lines covered (84.38%)

0.84 hits per line

Relevant lines Covered
Build:
Build:
1152 RELEVANT LINES 972 COVERED LINES
0.84 HITS PER LINE
Source Files on 0.3.0
  • Tree
  • List 16
  • Changed 4
  • Source Changed 0
  • Coverage Changed 4
Coverage ∆ File Lines Relevant Covered Missed Hits/Line

Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
30568947099 0.3.0 Add Amazon S3Files support for Gen3Workflow (#170) *Enable bucket versioning * Update EKS security group filter to use EKS group name * Create dynamic IAM role for S3Files * Add STORAGE_TYPE config variable, add documentation for s3files * Make S... push 30 Jul 2026 06:08PM UTC web-flow github
84.38
See All Builds (545)

Badge your Repo: gen3-workflow

We detected this repo isn’t badged! Grab the embed code to the right, add it to your repo to show off your code coverage, and when the badge is live hit the refresh button to remove this message.

Could not find badge in README.

Embed ▾
README BADGES
x

If you need to use a raster PNG badge, change the '.svg' to '.png' in the link

Markdown

Textile

RDoc

HTML

Rst

Refresh
  • Settings
  • Repo on GitHub
STATUS · Troubleshooting · Open an Issue · Sales · Support · CAREERS · ENTERPRISE · START FREE TRIAL · SCHEDULE DEMO
ANNOUNCEMENTS · TWITTER · TOS & SLA · Supported CI Services · What's a CI service? · Automated Testing

© 2026 Coveralls, Inc