sartorlab / methylSig
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LAST BUILD ON BRANCH Bioc_3_10
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246

Pull #41

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Include main vignette in README.md
Pull Request #41: Pull Bioc_3_10 into master for Bioconductor submission

509 of 509 new or added lines in 9 files covered. (100.0%)

508 of 509 relevant lines covered (99.8%)

479.86 hits per line

Relevant lines Covered
509 RELEVANT LINES 508 COVERED LINES
479.86 HITS PER LINE
Source Files on Bioc_3_10
Coverage ∆ File Lines Relevant Covered Missed Hits/Line

Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
246 Bioc_3_10 Include main vignette in README.md Pull #41 web-flow travis-ci pending completion  
245 Bioc_3_10 Include main vignette in README.md push rcavalcante travis-ci pending completion  
244 Bioc_3_10 Add CITATION and NEWS * Remove, for now, filter_loci_by_snps() push rcavalcante travis-ci pending completion  
243 Bioc_3_10 Issues #39 and #40: Vignette edits push rcavalcante travis-ci pending completion  
242 Bioc_3_10 Issues #39 and #40: Add BiocStyle to Suggests push rcavalcante travis-ci pending completion  
240 Bioc_3_10 Issue #37: Add filter_loci_by_location() * Function removes loci from bs that are in gr. * This function will be used in the SNP removal function once the SNPs are arranged into a GRanges. * Added some testing data in data-raw/03-create_internal_... push rcavalcante travis-ci pending completion  
239 Bioc_3_10 Issue #34: Add diff_binomial() * Variable naming conventions are aligned with diff_methylsig() in replacing 'creads' and 'treads' with 'meth_reads' and 'unmeth_reads', respectively. Also variables ending in 1/2 are replaced with control/case, res... push rcavalcante travis-ci pending completion  
238 Bioc_3_10 Issue #36: Stable diff_dss_fit() and diff_dss_test() * Implemented methylation recovery via factors in a factor vector from the design matrix as well as via percentiles in a numeric vector from the design matrix. Took a more direct approach to st... push rcavalcante travis-ci pending completion  
237 Bioc_3_10 WIP: Issue #36: Add guardrails to diff_dss_test() push rcavalcante travis-ci pending completion  
236 Bioc_3_10 WIP: Issue #36: Add diff_dss_fit() and diff_dss_test() In line with other testing packages, split the fit and test functions. the _fit() function will be a direct wrapper of DSS::DMLfit.multiFactor(), and the test function will have some addition... push rcavalcante travis-ci pending completion  
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