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payu-org / payu
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master: 60%

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LAST BUILD BRANCH: telemetry-allow-optional-proxy-setting
DEFAULT BRANCH: master
Repo Added 16 Oct 2019 10:58PM UTC
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LAST BUILD ON BRANCH 1.0.2
branch: 1.0.2
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Fine-grained reproduce flags and testing (#204)

* Added test model for ... testing. Has minimal requirements and means
tests can be independent of model driver implementation. A platonic
ideal if you will.

* Added config options for fine-grained reproduce options. Input, exe
and restart reproduce can be turned on independently of each other.

* Added extensive testing of init/setup and reproduce.

* Added new test to travis, and pytest dependency.

* Added pytest to setup.py

* Moved PBS env init to cli to remove dependence on PBS for setup

* Add coverage to pytest

* Updated travis badge URL

* Cast run_id to string before subscripting

* Fixed old API call in profile command

* Fixed old f90nml API call in mitgcm model

* Rolled back change to os.makedirs. Removed exist_ok argument as it
isn't python2 compliant. Just use local mkdir_p function.

* Initialise existing_files attribute to empty set so no need to
check if the attribute exists. Avoids spurious pylint errors.

* Refactored try/except block in run_userscript. Avoids spurious pylint
error about CalledProcessError not having errno attribute, but also
cleaner to separate into different except blocks.

* Disabled E1136 check for routine in mom driver (not really used anyway)

* Add pylint check to travis

* Added pylint to travis requirements

* Added scipy dependency, and scipy for travis

* Wrapped input manifest load in try/except block to
make more error resistant

* Added cd context to payu_setup wrapper for cleaner code

* Added more tests to exe and input reproduce to clarify logic
for corner cases

* Added setuptools as a build requirement after conda error with CircleCI:

RemoveError: 'setuptools' is a dependency of conda and cannot be removed from
conda's operating environment.

* Change to conda update --all

* Added tests for scaninputs

* Commented out PBS torque setup as not used, doesn't install
correctly and someti... (continued)

85 of 85 new or added lines in 10 files covered. (100.0%)

976 of 3047 relevant lines covered (32.03%)

0.64 hits per line

Relevant lines Covered
Build:
Build:
3047 RELEVANT LINES 976 COVERED LINES
0.64 HITS PER LINE
Source Files on 1.0.2
  • List 0
  • Changed 0
  • Source Changed 0
  • Coverage Changed 0
Coverage ∆ File Lines Relevant Covered Missed Hits/Line

Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
336 1.0.2 Fine-grained reproduce flags and testing (#204) * Added test model for ... testing. Has minimal requirements and means tests can be independent of model driver implementation. A platonic ideal if you will. * Added config options for fine-gra... push 17 Oct 2019 02:46AM UTC web-flow travis-ci pending completion  
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