neurobagel / bagel-cli

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• dependabot/github_actions/coverallsapp/github-action-2.2.3
• Remi-Gau-patch-1
• adai-pheno-layer
• adai/update-readme
• add-annotation
• add-codecov
• add-derivatives-command
• add_dev_container
• add_release_build
• align-terms-to-naming-standards
• allow-auto-on-protected-branch
• allow-force-push-for-release
• alyssadai-patch-1
• auto
• bug-86-87
• bug/age-value-handling
• build-on-release-wfs
• dependabot/github_actions/actions/checkout-4
• dependabot/github_actions/actions/setup-python-4
• dependabot/github_actions/actions/setup-python-5
• dependabot/github_actions/actions/stale-8
• dependabot/github_actions/actions/stale-9
• dependabot/github_actions/codecov/codecov-action-4
• dependabot/github_actions/codecov/codecov-action-5
• dependabot/github_actions/codespell-project/actions-codespell-2
• dependabot/github_actions/coverallsapp/github-action-2.1.2
• dependabot/github_actions/coverallsapp/github-action-2.2.0
• dependabot/github_actions/coverallsapp/github-action-2.2.1
• dependabot/github_actions/coverallsapp/github-action-2.2.2
• dependabot/github_actions/coverallsapp/github-action-2.3.0
• dependabot/github_actions/coverallsapp/github-action-2.3.1
• dependabot/github_actions/coverallsapp/github-action-2.3.3
• dependabot/github_actions/coverallsapp/github-action-2.3.4
• dependabot/github_actions/docker/build-push-action-5
• dependabot/github_actions/docker/build-push-action-6
• dependabot/github_actions/docker/login-action-3
• dependabot/github_actions/docker/setup-buildx-action-3
• dependabot/pip/black-24.3.0
• dependabot/pip/pydantic-1.10.13
• dependabot/submodules/bagel/pipeline-catalog-50ffffc
• dependabot/submodules/bids-examples-064db11
• dependabot/submodules/bids-examples-0d60f73
• dependabot/submodules/bids-examples-1a000d6
• dependabot/submodules/bids-examples-1c30c6e
• dependabot/submodules/bids-examples-1d7cf31
• dependabot/submodules/bids-examples-38e3467
• dependabot/submodules/bids-examples-401f4cf
• dependabot/submodules/bids-examples-4460013
• dependabot/submodules/bids-examples-464d440
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• dependabot/submodules/bids-examples-80937c4
• dependabot/submodules/bids-examples-81a9d1b
• dependabot/submodules/bids-examples-8550641
• dependabot/submodules/bids-examples-86ea39f
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• dependabot/submodules/bids-examples-b6e5234
• dependabot/submodules/bids-examples-b8f7f69
• dependabot/submodules/bids-examples-bcd3cb9
• dependabot/submodules/bids-examples-bfcc5c6
• dependabot/submodules/bids-examples-c557d1f
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• dependabot/submodules/bids-examples-d8455af
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• dependabot/submodules/bids-examples-e857597
• dependabot/submodules/bids-examples-ea3f7f6
• dependabot/submodules/bids-examples-eff47f1
• dependabot/submodules/bids-examples-fc080d2
• dependabot/submodules/neurobagel_examples-05ab0bd
• dependabot/submodules/neurobagel_examples-087467f
• dependabot/submodules/neurobagel_examples-1526dbf
• dependabot/submodules/neurobagel_examples-3e33d8b
• dependabot/submodules/neurobagel_examples-80214a9
• dependabot/submodules/neurobagel_examples-8e13bf2
• dependabot/submodules/neurobagel_examples-8e16567
• dependabot/submodules/neurobagel_examples-94282f1
• dependabot/submodules/neurobagel_examples-ca6a4be
• dependabot/submodules/neurobagel_examples-cf2734e
• dependabot/submodules/neurobagel_examples-d37c4d7
• dependabot/submodules/neurobagel_examples-d44875e
• dependabot/submodules/neurobagel_examples-dd94301
• dependabot/submodules/neurobagel_examples-dfbe395
• dependabot/submodules/neurobagel_examples-eb4f319
• dependabot/submodules/neurobagel_examples-f1b00e5
• dependabot/submodules/neurobagel_examples-f378f48
• dependabot/submodules/tests/bids-examples-2f634a1
• dependabot/submodules/tests/bids-examples-507df66
• dependabot/submodules/tests/neurobagel_examples-0a86d83
• dependabot/submodules/tests/neurobagel_examples-66c32ef
• doc-201
• e203
• enh-144/update_ref_example
• enh-codespell
• feat-106/add-cogatlas-namespace
• feat-109/discrete-values-check
• feat-29-79
• feat-4
• feat-76-77
• feat-82
• feat-96
• fix-129/add-controlled-term-classes
• fix-139/add-ncit-prefix
• fix-151/make-continuous-transform-mandatory
• fix-docker-wfs
• fix-proc-status-col-names
• handle-dashes-in-col-names
• handle-no-session-column
• iss#91
• iss-141/add-dataset-location-attrs
• iss-157/configurable-output-name
• iss-188/update-help-text
• iss-190/refactor-subject-overlap-check
• iss108
• iss110
• iss149
• iss155
• issue383
• looser-assessment-availability
• main
• maint-118
• maint-128
• maint-187
• maint-69/update-readme
• maint-80-84
• maint-95/refactor-bids-utils
• maint-99
• maint-dependabot
• model-pipeline-info
• multi-column-attribute-annot
• newbranch
• package-pipeline-catalog
• patch
• pin_dependencies
• pre-commit
• pre-commit-ci-update-config
• pydantic-v2-refactor
• refactor-utils
• reimplement-controlled-term-classes
• release-pr
• remove-docker-nightly-workflow
• remove-protected-branch-plugin
• rename-custom-sess
• repo-sync/workflows/default
• setup-coveralls-parallel
• silly-branch
• sillybranch-2
• specify-input-encoding
• surchs-patch-1
• surchs-patch-add-docs
• surchs/issue105
• surchs/issue153
• surchs/issue168
• surchs/issue90
• test-empty-pr
• trigger-release
• try_a_release
• update-bagel-bids-cmd
• update-help-text
• update-readme
• update_copyright
• update_examples
• v0.1.0
• v0.1.1
• vocab-generation-script
• warn-case-sensitive-ids

Merge 421cc3ebf into 78f48ab39