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matthew-brett / nibabel
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LAST BUILD BRANCH: tmp
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Repo Added 26 Sep 2013 08:41PM UTC
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LAST BUILD ON BRANCH fixing-parrec
branch: fixing-parrec
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  • fixing-parrec
  • 419-using-regexps
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  • add-ordereddict
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  • alternative-gifti-fix
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  • arraywriter-refactor
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pending completion
379

push

travis-ci

matthew-brett
RF: rewrite parrec affine routine after testing

Michael's new data had enough variation to test most combinations of
transformations.  The key seems to be to transform first to the Philips
axes (anterior-posterior, inferior-superior, right-left), then apply the
rotations, before finally taking into RAS output space.

Add the PAR files for Michael's test data set and test against the
current versions of the affines, which I checked by reslicing the data
with the affines (see check_parrec_reslice.py script).

15090 of 16587 relevant lines covered (90.97%)

0.91 hits per line

Relevant lines Covered
Build:
Build:
16587 RELEVANT LINES 15090 COVERED LINES
0.91 HITS PER LINE
Source Files on fixing-parrec
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Coverage ∆ File Lines Relevant Covered Missed Hits/Line

Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
379 fixing-parrec RF: rewrite parrec affine routine after testing Michael's new data had enough variation to test most combinations of transformations. The key seems to be to transform first to the Philips axes (anterior-posterior, inferior-superior, right-left),... push 21 Aug 2014 07:06PM UTC matthew-brett travis-ci pending completion  
371 fixing-parrec WIP: Add bvals/bvecs Pull #4 18 Aug 2014 11:38PM UTC Eric89GXL travis-ci pending completion  
370 fixing-parrec ENH: Support for partial recordings, and overwrite checking Pull #4 11 Aug 2014 12:32AM UTC Eric89GXL travis-ci pending completion  
369 fixing-parrec FIX: Support XYTZ order and multiple echos in PAR/REC files Pull #4 10 Aug 2014 06:43AM UTC Eric89GXL travis-ci pending completion  
359 fixing-parrec RF: refactor parrec affine, possibly breaks stuff * Rephrase the transformations in terms of LPS instead of RAS in the hope of making the code easier to read * Remove safety-net for the rotations, I'm confident the r2agui approach and euler2m... push 14 Jul 2014 07:24PM UTC matthew-brett travis-ci pending completion  
358 fixing-parrec RF: remove use of deprecated read_img_data Replace with recommended ``dataobj.get_unscaled`` method. push 11 Jul 2014 01:50AM UTC matthew-brett travis-ci pending completion  
356 fixing-parrec BF: parrec2nii ignored FH image offset Part of the problem in gh-227 push 05 Jul 2014 03:59PM UTC hanke travis-ci pending completion  
340 fixing-parrec RF: python 3 fixes for openers test Make bytes / strings explicit. gzip doesn't appear to allow opening for read in text mode in Python 3. push 16 Feb 2014 12:48AM UTC matthew-brett travis-ci pending completion  
339 fixing-parrec RF: some python 3 fixes for par / rec stuff numpy strings expected to be bytes, not strings. Files must get opened with binary flag. push 16 Feb 2014 12:40AM UTC matthew-brett travis-ci pending completion  
338 fixing-parrec RF: change slice orientation names for par/rec Change 'transversal' to 'transverse'; 'sagital' to 'sagittal'. I think these are the standard names: http://en.wikipedia.org/wiki/Sagittal_plane push 16 Feb 2014 12:11AM UTC matthew-brett travis-ci pending completion  
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