mantidproject / mantidimaging

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• cherry-pick_user_facing_bug_fixes
• 1329_Apply_to_all_stacks
• 1619-lock_sidebar_for_spectrum_viewer_window
• 1851-Remove_maximum_projection_angle_field
• 2.4.0
• 2.5.0
• 2.5.0a2.post242-20230309
• 2.5.0a2.post262-20230310
• 2.5.0a4
• 2.5.1
• 2.6.0
• 2.7.0
• 2.7.0b1
• 2.8.0
• 2057-reset_gui_to_default_layout
• 2136-Cancel-Data-Load-on-Load
• 2189-move-tests
• 2189-sphinx-warnings-1
• 2236-Add_format_checkers
• 2247_issue_and_pr_template
• 2297_refactor_set_roi
• 2297_remove_range_from_model
• 2297_remove_roi_list_model
• 2297_set_new_roi
• 2347-Spectrum-Viewer-Support-Normalising-ROIs-of-Different-Sizes
• 2362-update_operation_window_value_warnings
• 2365-logging-tab
• 2365_logging_settings
• 2366-Warning-Dialog-MI-shutdown-was-Not-Clean-and-Point-to-Logs
• 2368_stack_properties_menu
• 2369-residuals
• 2378-refactor-roi
• 2378-refactor-roi-table-widget
• 2378-refactor-roi-table-widget-2
• 2378-refactor-spectrumviewerview
• 2378-roi-form-widget
• 2378-roi-form-widget-2
• 2378_PART_FOUR_extract_ROIFORMWidget_into_widgets
• 2378_PART_ONE_Extract_ROI_Properties_Table
• 2378_PART_TWO_extract_ROI_table_into_class
• 2383-sepectrum-window-tabs
• 2384-Scaleable-ROI-Properties-View-Widget
• 2385_ROI_drop_down_widget
• 2388_Add-ROI-to-Spectrum-Line-Plot
• 2388_Add_ROI_to_Spectrum_Line_Plot
• 2389_Create-an-Image-View
• 2390-Display-Selected-ROI-within-Image-view
• 2393-Export-Window-Table
• 2394-Create-Dropdown-Menus-to-Select-Export-Format
• 2395-Export-Window-Create/Add-ImageView-(Mapping)-to-Export-Window
• 2397-FITS_Support
• 2412-convergence-optimise
• 2419_tof_3_dcm
• 2420_RITS_export_equal_error
• 2422_Add_ROI_after_export
• 2433-autospec-speedup
• 2436_static_copywrite
• 2438-dev-env-fix
• 2442-spectrum_import_on_build_error
• 2444-ruff-implicit-namespace-package
• 2446-update_developer_guideline_docs
• 2448_live_viewer_spectrum_async
• 2455_RITS_dont_divide
• 2455_RITS_dont_divide-final
• 2456_normalised-image-in-spectrum-view
• 2466-right-click-treeview-error
• 2469_LV_slow_fits
• 2471_spectrum_viewer_roi_threading
• 2472-tabs-not-always-stacked-correctly
• 2473_sample_swicth_error
• 2477-workflow-names
• 2480_live_viewer_eyes_test_independant
• 2483_add_geometry_to_imagestack
• 2484-change-cortilt-calc-to-fill-in-data
• 2484-change-cortilt-to-sync-ui-geometry
• 2485-recon-algos-get-imagestack-geometry
• 2486_spec_plot_update
• 2490_LV_images_modified_intensity_plot
• 2497_LV_Intensity_slow_files
• 2502_wrong_links
• 2503-Save-as-image-in-spectrum-viewer
• 2508-spectum-plots
• 2516_spectrum_plotting_options
• 2523_SV_startup_speedup
• 2525_spectrum_scatter_tests
• 2530-fix-button
• 2531-COR-display-not-updating
• 2532-jenks-nan-safe
• 2542-fix-cor-line
• 2545_overlap_correction_operation
• 2548-fitting-engine
• 2548-fitting-engine-2
• 2548-fitting-engine-tests
• 2549-read-geometry-data-from-files
• 2556-Handle-NaNs-in-Data-to-Prevent-Gaps-in-Fitting-Plot
• 2561-update-geometry-parameters-in-imagestack
• 2563-Fitting-Display-Fails-to-Update-Properly-After-Adjustments
• 2564-Size-ImageView-in-Fitting-Window
• 2565_operations_tests_overlap_coorection
• 2576-fix-MIPlotItemTest
• 2578-Add-Export-Table
• 2580-update-yapf
• 2582-Doc-tweaks
• 2586-fit-all
• 2588_edit_fitting_init_params
• 2589_overlap_correction_compare_cuberead
• 2593-spectrum-viewer---fitting-tab-sample-image-not-pinned-to-the-top-right-corner-on-window-resize
• 2596_fitting_tab_resolve_units_displayed
• 2597-Add_documentation_of_MI_use_cases
• 2599_duplicate_plotdataitem
• 2603_tof_data_type_revision
• 2606-refactoring
• 2606-update-spectrum
• 2608_bragg_edge_fitting_choice
• 2611-stack-properties-show-geometry-information
• 2613_bragg_edge_Santisteban_backend
• 2614-geometry-refactor-projection-angles-handling
• 2621-fix-cor-conversion
• 2624_SPDHG_attribute_error
• 2626-Reconstruction-Logging
• 2626-logging-export-files
• 2626-logging-op-final
• 2626-logging-opps
• 2626-spectum-logging
• 2626_clean_up_logging
• 2626_logging_import_files
• 2627-Reconstruction-TypeError-when-running-Minimise-Error
• 2627_slice_type_error
• 2632-add-cor-tilt-properties-to-geometry
• 2638-change-geometry-to-accept-topmost-cor
• 2640-release_notes-pre-commit
• 2642_santisteban_bad_fit_crash
• 2648-Improve-error-when-log-file-doesn't-have-a-header
• 2659_pyinstaller_pkg_resources_depreciation
• 2660-prevent-multiple-threads-spectrum
• 2665_update_astro
• 2668-Updated-scikit-image
• 2671_Update-PyRight
• 2672-update-sphinx
• 2674-Update-coverage
• 2676-csv-export
• 2677-roi-colour-change-error
• 2680-update-mypy
• 2682-RuntimeError-in-recolor_links
• 2682_pyright_enable_checks
• 2682_pyright_optional_call_flag
• 2685_180_proj_file_clean_up
• 2687-Main-Pathlib
• 2687-gpu-util
• 2687-update-pathlib
• 2687_Imagestack_path
• 2687_Manager_pathlib
• 2687_command_Pathlib
• 2687_data_Pathlib
• 2687_eyes_test_Pathlib
• 2687_loader_path
• 2687_op_load_Pathlib
• 2687_saver_path
• 2687_setup_path
• 2687_unit_help_Pathlib
• 2690-exception-worker-thread
• 2693-refactor-180-deg-projection-check
• 2698_spectrum_spinboxes_update_limits
• 2699-resize-fitting-region
• 2700-fit-all-errors
• 2705-refactor-recon-get-stack
• 2707-update-recon-show-event
• 2709-recon-widget-annotations
• 2710-recon-stack-methods-naming
• 2710-recon-update-stack-methods-naming
• 2714_live_viewer_TaskWorkerThread
• 2715_spectrum_thread_mutable
• 2716_cherry_picked_commits
• 2717_update_versions
• 2721-spectrum-region-tof
• 2748-update-gui-test-docs-for-windows
• 2753-bug-loaded-angles-not-on-interface
• 2754-welcomescreen-layout-warnings
• 2757_Fix-docs-publish-empty-commit_1
• 2759-add-dedicated-geometry-window
• 2763-conda-upload
• 2765_create_sum_stack_intensity_operation_front_end
• 2766_sum_stack_intesities_back-end
• 2770-update-cil
• 2777_leak_tracker_object_alive_limit
• 2779-geometry-bug-axis-position-change
• 2783_auto_crop_operations_backend
• 2784_auto_sample_bounding_box
• 2785_system_tests_offscreen
• 2788_reduce_alive_objects_system_loading_tests
• 2791-Allow-resizing-ROI-from-all-corners
• 2795-mon-norm-test-refactor
• 2795-ops-validation
• 2803-ring-remove-bug_1
• 2811-packages-update-cil-25
• 2822_pixi
• 2827-add-3d-conebeam-support
• 2828_rois_persist_switching_stacks
• 2831-Chi2-fitting
• 2831-Chi2-fitting_final
• 2834-geometry-add-new-type-property
• 2839-Caching-spectrum-viewer-refactor
• 2843_spectrum_viewer_fitting_constraints_backend
• 2844_spectrum_fitting_contraints_gui
• 2846-add_CIL3DViewer_dependency
• 2848-add_3D_viewer_window
• 2849-embed_widget_in_3d_viewer_window
• 2857-extract-binning
• 2858_prevent_fitting_single_image_stacks
• 2859-base-window-add-question-dialog
• 2864_rits_roi_adjust_spinboxes
• 2870_collect_imagecodecs_hidden_imports
• 2871-imagecodecs-hidden-import-main
• 2872-repair_3D_widget_for_linux
• 2874_save_as_sinograms
• 2879-progress-bar-not-appearing-for-operations
• 2885_windows_build_ccpi_fix
• 2886-resolve_headless_testing
• 2888-Limit-recon-algorithm-selection-based-on-geometry
• 2892_auto_roi_normalisation
• 2893_add-shape-accessors
• 2894-fixes-for-data-accessor
• 2896_pyinstaller_cil_files_missing
• 2903_fix-some-remaining-data-access
• 2909_order_sinogram_with_late_angle_loading
• 2911_SPDHG-progress-bar
• 2914-bem-sub-roi-select
• 2914-binner-validation
• 2914-rename
• 2915-add_3D_viewer_screenshot_tests
• 2915-add_3D_viewer_screenshot_tests-clean
• 2918_leak_info_display_errors
• 2919-async-task-test
• 2920_spectrum_auto_find_norm_stack
• 2923-Fix-Geometry-window-layout-and-figure-overlap
• 2925-update_3D_viewer_background_color
• 2926_headless_system_test
• 2933-Add-Keyboard-Shortcut-for-Spectrum-Viewer
• 2934-separate-caching-logic-from-spectrum
• 2942_GUI-changes-for-projection-selection-in-COR-Tilt-correlation
• 2944Remove-Duplicate-Reset-Layout-Code-in-setup_shortcuts
• 2949-180-Handling-Cleanup-part-1
• 2949-Operation-Window-180°-Handling-Cleanup
• 2949-Recon-Window-180-Handling-Cleanup
• 2953-hook_up_spectrum_for_sub_roi
• 2954-async_run_fit_on_sub_rois
• 2954-run_fit_on_sub_rois
• 2955_spectrum_viewer_map_fitted_params
• 2958-migrate_all_checks_from_conda/mamba_to_pixi_in_github_actions
• 2958-migrate_linting_checks_from_conda/mamba_to_pixi_in_github_actions
• 2961-migrate_windows_testing_workflow_from_conda/mamba_to_pixi
• 2966_operation_append_stack_frontend
• 2967-enable_pre_commit_hooks_to_use_pixi
• 2970_bug_resolve_headless_docs_build_environment
• 2973-sphinx_docs_carousel
• 2975-fix-for-docs
• 2975-fix-for-docs-2
• 2975-improve-conda-caching
• 2975-no-space
• 2977_safe_apply_unchecked_by_default
• 2978_rename_dataset_stacks
• 2979_refine_auto_find_files_loading
• 2988_spectrum_data_key_error
• 2989-Enable-CoR-after-late-angle-load
• 2989-Enable-CoR-after-late-angle-load-final
• 2990-show-correct-title-refine
• 2992-fitting_form_refactor
• 2992-fitting_form_refactor-2
• 2993_Geometry-Warning-when-closing
• 2999-fix_build_fails_on_test-windows
• 3.0.0
• 3.0.1
• 3.1.0
• 3.1.0-beta.0
• 3.1.0b1
• 3.1.1
• 3003_operations_append_stacks_backend
• 3007-Distance-units-for-geometry
• 3014_reduce_cor_inspect_dialog_launch_height
• 3015_CoR-and-Iteration-Refinement-Cancel-Button-and-Exit
• 3016_Delete-Geometry
• 3017_Disable-Invalid-Projection-Correlation-Angle-Pair
• 3021_append_stacks_operation_eyes_test
• 3022_SV_decouple_fitting_export_tabs
• 3023-update-main-window-angles-after-geometry-creation
• 3024-Tilt-and-COR-values-should-be-read-from-geometry
• 3030-Binning-spinboxes-index-out-of-range
• 3036-eometry-changes-not-synchronised-to-Reconstruction
• 3038_hanlde_sinograms_on_load
• 3042_remove_unneeded_sinogram_menu_options
• 3043_load_roi_spectrum_viewer
• 3053_remove_sinogram_ordering_checks
• 3054-show-RITS-ROI-in-Image
• 3064_increase_win_timeout
• 3068__improved_log_validation
• 3078-fix_export_table_not_updating_on_changing_fitting_model
• 3080_BE_system_test
• 3082_pass_correct_vectors_geom
• 3086-Segmentation-fault-in-TestGuiSpectrumViewer
• 3086-del-main-window
• 3089_chi2_label_consistency
• 3092_roi_bin_warning_updates_on_shape_change
• 3094_Update-Authors
• 3095-move_main_to_new_version_2
• 3111-precommit-ruff-version
• 3115-Fix_rescale_and_autocrop_in_crop_coordinates_operation
• 3116-Main-Window-Toggle-Averaged-Image
• 3123_no_rois_fitting_tab_keyerror
• 3126-normalise_stack_shape_mismtch_handling
• 3127_spectum_view_NAN_index_error
• 3130-update-environment-minimum-version
• 3131-build-timeout
• 3136-migrate_to_rattler-build
• 3144-add-SIRT-non-negativity-constraint
• 3147-types-pyaml_update
• 3149-update_actions
• 3151_update_v4_to_v5_cache
• 3152-polymorphic_stack_hook
• 3158_resolve_cor_refinment_inflated_values
• 3165_update_pyright
• 3174-Refactor-SPDHG-reconstruction
• 3180-default_selected_stack_in_image_save_dialog
• 3182-fix_version_mismatch_between_generated_recipe_and_gui
• 3203_release-version-update
• DRAFT-ROI-SCALE
• DUMMY_spectrum_scatter_tests
• ImageStack-safely-handle-shared-memory-input
• add_data_types
• automate_author_updates
• automate_compiling_release_notes
• cherry-pick-spectrum_roi-delete_RE-fix
• cherry-pick_ci_and_developer_tooling_issues
• cherry-pick_remove_max_proj_angle_field
• cherry-pick_resolve_cor_refinement_inflated_values
• cherry-pick_resolve_version_schema_for_built_packages
• cherry_pick_load_rois_from_csv
• draft_finder_pathlib
• embed_welcome_screen
• ensemble-programming
• flash-wait-for-visible
• flash_pr_resolve_version_schema
• geometry-work
• gh-readonly-queue/main/pr-1997-827b2c9df8f1b6ee9708fd42685629339b571b97
• gh-readonly-queue/main/pr-2069-b6087e896e44848c19cbf898f5180df643e6e5af
• gh-readonly-queue/main/pr-2073-e82455a2ba1d2ec1d221e3705a21773aff8f7e19
• gh-readonly-queue/main/pr-2075-9c736a4692fc4b2aba8812a2250a83b0b5ff9e06
• gh-readonly-queue/main/pr-2078-861bd1897e5cbd02621a33c022fd7652e2c388be
• gh-readonly-queue/main/pr-2083-8b6a517b0beee5bfbd65e4d9c6ace8d296c7458e
• gh-readonly-queue/main/pr-2084-2fb30708476fb06424af811e2c5884f2ede18fb0
• gh-readonly-queue/main/pr-2085-1194d69ddfa349453ddae264e731ca1f9aa2ca99
• gh-readonly-queue/main/pr-2086-10d7e4033cc372255a8e34c3c7eefbea9c334b2f
• gh-readonly-queue/main/pr-2087-20acebac79e58549a4f59123174a867563f9c896
• gh-readonly-queue/main/pr-2088-79f29e5270036fd6b9b7cc7a51f6fe800ae928f5
• gh-readonly-queue/main/pr-2089-ae17b19d13d57f6a3b8d1252ff8c4b472b61fd27
• gh-readonly-queue/main/pr-2090-b95aebb3a98e3c8a335e1382c164e8ea6369b6c1
• gh-readonly-queue/main/pr-2091-d82757fd6294c9fbbbef58f26a520561fd991782
• gh-readonly-queue/main/pr-2092-d6f16e8fc4520dfdbe1ef0431b85aaf384567f14
• gh-readonly-queue/main/pr-2093-37eba311797dfc3a97b8fbb419fb83eb2f567baa
• gh-readonly-queue/main/pr-2100-6fce472ba7435e9da0e4ff769cfbe4fe5a2bd4aa
• gh-readonly-queue/main/pr-2103-bb51655a6a64ddcde9a96742b8cec699dff9a648
• gh-readonly-queue/main/pr-2104-fc0535e0354805d9b9b65c2fdee2ee1171d94af8
• gh-readonly-queue/main/pr-2108-4722babbd0e660f1c37c5fa59c913526f6fb487d
• gh-readonly-queue/main/pr-2110-102a0f582c61165cad480a2f61246058bcc72bc9
• gh-readonly-queue/main/pr-2111-a0c504194c1616c33ec80cf1b29a21320fa3f6d9
• gh-readonly-queue/main/pr-2112-cf2b2d21b52a448afc03840bf6ce64be9e54d860
• gh-readonly-queue/main/pr-2113-1ab346e62c7258359b193270d672c2d94111b15f
• gh-readonly-queue/main/pr-2118-589ecfcacc852909489fb89bf7731255251c849b
• gh-readonly-queue/main/pr-2120-2a6191e10426cb3747a51cacc6efdbb4a432021b
• gh-readonly-queue/main/pr-2121-94ba17cf92cd39b4f96356db86aa7b9be226bbab
• gh-readonly-queue/main/pr-2124-8cf0f8208fcd7e8061f3af1079b2bc9417f18cbb
• gh-readonly-queue/main/pr-2125-b866326c5c4d4e4a486415d5d12666e472c3defe
• gh-readonly-queue/main/pr-2126-6c294c159a08a26fe1582123f1c614276a967e65
• gh-readonly-queue/main/pr-2127-bf69a70966e10eb394bbcbacca8080772e2cc0fa
• gh-readonly-queue/main/pr-2130-db14d2310c2f6645a774299b2e355ad88b33a66f
• gh-readonly-queue/main/pr-2133-ccc3273712a3f3628f568fc4ffc08d1077f37e02
• gh-readonly-queue/main/pr-2134-c20905544e8ba3d1c6d95dda48b1153d4fdc62d6
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• gh-readonly-queue/main/pr-2208-aa6025b7eaaff1f00d1c8b609b116d41611ce126
• gh-readonly-queue/main/pr-2212-619bdd400f68c6ef35541e10a937916d056c71c2
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• support
• system-test-leak-fix
• test-new-roi-props
• test-screenshots
• update_action_token
• update_authors
• update_env_3.1.0
• update_environment_release_versions
• update_feature_issue_template
• update_pyright
• update_versions
• windows_gui_test_failure_debug

Build # 30821334437

Build Type

Pull #3218

github

Committed by web-flow

Commit Message

Merge 177151e04 into c5e314d5f

Pull Request Pull Request #3218: Cherry-pick User Facing Bug Fixes

Coverage Stats

3014 of 4785 branches covered (62.99%)

Branch coverage included in aggregate %.

13 of 16 new or added lines in 3 files covered. (81.25%)

11329 of 16300 relevant lines covered (69.5%)

0.7 hits per line