jlab / rust-debruijn
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coverage: 87.212% (-0.2%) from 87.373%
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Merge pull request #36 from jlab/dev

Optional `Exts` in `Reads`, memory limit fixes

424 of 513 new or added lines in 8 files covered. (82.65%)

392 existing lines in 6 files now uncovered.

7720 of 8852 relevant lines covered (87.21%)

4593387.92 hits per line

Relevant lines Covered
8852 RELEVANT LINES 7720 COVERED LINES
4593387.92 HITS PER LINE
Source Files on master

Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
19666544191 master Merge pull request #36 from jlab/dev Optional `Exts` in `Reads`, memory limit fixes push web-flow github
87.21
17157087581 master Merge pull request #30 from jlab/mergre_map_transcripts Transcript Mapping - new `IDEMData` summarizer: can hold (gene) IDs and edge coverage - new option to translate (group) IDs into ID-groups (orthogroups) when printing node info - new `Debrui... push web-flow github
87.37
17153954075 master Merge pull request #28 from jlab/merge_filter_edges - all k-mer sizes up to 64 - new method `DebruijnGraph::to_dot_with_paths`: prints to dot while highlighting a path - new method `DebruijnGraph::iter_edges`: iterates over all edges of the grap... push web-flow github
87.37
15710337174 master Merge pull request #24 from jlab/dev More summarizers, `id4b` feature new summarizers: - `TagsData`: only 1-bit enocoded tags - `IDData`: only IDs - `IDTagsCountsData` and `IDTagsCountsPEMData`: both IDs and tags + Counts etc. new `id4b` featu... push web-flow github
87.29
14991022630 master Merge pull request #18 from jlab/dev `EdgeMult` compression - add `EdgeMult` compatibility with graph compression - remove parallel compression methods push web-flow github
85.95
14642889194 master Merge pull request #15 from jlab/dev Paired & Stranded reads paired: - `ReadsPaired` stuct to store up to three `Reads` in and how they are paired - methods to iterate over the reads stranded: - `Stranded` enum stored in `Reads` stuct - adapt... push web-flow github
84.79
14356925917 master Merge pull request #12 from jlab/dev New DOT edge format - customizable format for `dot` edges - `Colors` (from `dbg`) to calculate variable colors - default methods for formatting edges and nodes: `Node::edge_dot_default` and `node_dot_default`... push web-flow github
84.27
14265292510 master Merge pull request #7 from jlab/dev New `Reads` struct and revamped summarizers - new `reads::Reads` struct for compact reads storage - new handling of ambiguous bases - move summarize methods to `SummaryData` - add new functionality to `Summary... push web-flow github
82.58
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