jlab / rust-debruijn
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Merge pull request #45 from jlab/dev

Refactor `SummaryData` implementations into `derive` macro

74 of 74 new or added lines in 6 files covered. (100.0%)

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8268 of 9246 relevant lines covered (89.42%)

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Builds Branch Commit Type Ran Committer Via Coverage
27557395171 master Merge pull request #45 from jlab/dev Refactor `SummaryData` implementations into `derive` macro push web-flow github
89.42
27267364905 master Merge 9a514859f into 9407f45ec Pull #47 web-flow github
87.88
27195454994 master Merge pull request #46 from jlab/merge/docs-gh-pages Publish the Rust documentation for the crate on GitHub Pages push web-flow github
88.4
26744360352 master Merge pull request #43 from jlab/dev Memory fixes, extended error removal methods, add `EdgeMap` - increase memory efficiency of `BaseGraph` - remove disconnection check in k-mer quality edge filter during graph construction - the filter now... push web-flow github
88.44
25312024362 master Merge pull request #40 from jlab/dev Utilize PHRED-scores for error removal, add 3D json compatibility ### Utilize PHRED-scores for error removal - the quality scores from the sequencing reads can be stored in a `Reads` - the scores are binned ... push web-flow github
88.24
19666544191 master Merge pull request #36 from jlab/dev Optional `Exts` in `Reads`, memory limit fixes push web-flow github
87.21
17157087581 master Merge pull request #30 from jlab/mergre_map_transcripts Transcript Mapping - new `IDEMData` summarizer: can hold (gene) IDs and edge coverage - new option to translate (group) IDs into ID-groups (orthogroups) when printing node info - new `Debrui... push web-flow github
87.37
17153954075 master Merge pull request #28 from jlab/merge_filter_edges - all k-mer sizes up to 64 - new method `DebruijnGraph::to_dot_with_paths`: prints to dot while highlighting a path - new method `DebruijnGraph::iter_edges`: iterates over all edges of the grap... push web-flow github
87.37
15710337174 master Merge pull request #24 from jlab/dev More summarizers, `id4b` feature new summarizers: - `TagsData`: only 1-bit enocoded tags - `IDData`: only IDs - `IDTagsCountsData` and `IDTagsCountsPEMData`: both IDs and tags + Counts etc. new `id4b` featu... push web-flow github
87.29
14991022630 master Merge pull request #18 from jlab/dev `EdgeMult` compression - add `EdgeMult` compatibility with graph compression - remove parallel compression methods push web-flow github
85.95
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