hammerlab / varcode

87%

master: 88%

LAST BUILD ON BRANCH variant-ends-after-exon

branch: variant-ends-after-exon

CHANGE BRANCH

x

Reset

• variant-ends-after-exon
• travis
• master
• expose_infer_genome_from_vcf
• readme-with-ipython-notebook
• drop-read-evidence
• issue-129
• fix-travis-conda
• dont-memoize-top_priority_effect
• version
• exonic-splice-site-can-be-coding
• v0.4.2
• indel-properties
• quotes-around-nucleotides
• as_dataframe
• parse-sample-info
• variant_pickling
• trivial-tweak
• version-handling
• effects-df
• Klf6-mm10-frameshift-test
• v0.4.8
• small-reorg-of-effects
• v0.4.9
• v0.4.10
• v0.4.11
• fix-versioneer
• v0.4.12
• less-memoization
• v0.4.13
• v0.4.14
• clone_metadata
• fix-issue-158
• v0.4.15
• cli
• v0.4.16
• moved-collection-to-own-repo
• v0.4.17
• fix-163
• v0.4.18
• fix-annotation-bugs
• v0.4.19
• add-mutation-effect-to-init
• v0.5.0
• v0.5.1
• fix-reference-bug
• arahuja-patch-1
• merged-serialization
• arahuja-patch-2
• fix_effect_serialization
• travis-readme
• v0.5.2
• v0.5.3
• change-readme-image-links-to-html
• v0.5.8
• v0.5.7
• fix-premature-stop-mispredicted-as-deletion
• varcode-logger
• v0.5.9
• varcode-update-releasing-doc
• serialize-intronic-splice-site
• v0.5.10
• stoploss-with-extra-codons
• v0.5.11
• maf_improvements
• v0.5.12
• use-ensembl87
• load-maf-raise-on-error
• v0.5.13
• varcode-add-distinct
• v0.5.14
• maf_loading_fixes
• v0.5.15
• variants-vcf-output

Build # 416

Build Type

push

travis-ci

Committed by julia326

Commit Message

Adding a logging statement when trimming a variant to match an exon, also a test
to make sure it's sane and the logging statement is printed (run with --debug=varcode).

Run Details

2 of 2 new or added lines in 1 file covered. (100.0%)

1218 of 1395 relevant lines covered (87.31%)

1.74 hits per line