hammerlab / survivalstan

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LAST BUILD ON BRANCH 0.1.1

branch: 0.1.1

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Build # 55

Build Type

push

travis-ci

Committed by web-flow

Commit Message

0.1.1 release (#9)

* add docstrings; fix pep8 errors

* add plot_coefs function to utils

* add `model_cohort` field to extracted baseline hazards

* attempt to generalize plotting helper functions

* fix bug

* fix minor errors in utils

* adding new util - extract_params_long

* testing param passing

* bugfix

* first attempt to add timepoint-level inputs

* use parameter name instead of default value

* bug fixes

* allow timepoint id to be created in helper function

* dont fail if no beta coefs estimated

* fix sort_value error

* add / update models

* add test for null model

* add/modify tests

* remove travis_wait command

* parameterize num_iter; try only 500

* modify coverage to omit version.py

* add null model test

* enable PEM test model

* add travis-wait back into travis test command

* reduce iter to 300

* back to testing models one at a time

* add module for simulating data (null exp model)

* restrict tests to simulated data by default

* try running simulated-data tests using default settings

Run Details

139 of 254 relevant lines covered (54.72%)

1.07 hits per line