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globus-labs / faster-molecular-hessians
97%

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DEFAULT BRANCH: main
Repo Added 30 Aug 2023 11:41AM UTC
Files 20
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  • main
  • add-colmena
  • add_ci
  • add_jacobian
  • add_mbtr
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  • baseline-sampling
  • big-test
  • clear-nbs
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31 Dec 2023 08:46PM UTC coverage: 96.635% (-0.04%) from 96.675%
7372649128

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github

web-flow
Use per-element ML models for local descriptors (#39)

* Implement a per-element version of SOAP

* Ensuring matrices are on same devices

* Scale scaling constants by number of atoms

* Use per-atom scaling in train, add patience to training

* Bug fix: Only scale forces one

I scaled the energy, so I don't need to scale the derivatives
of energy wrt descriptors

* Add lengthscale as option, remove HPO from notebook

804 of 832 relevant lines covered (96.63%)

0.97 hits per line

Relevant lines Covered
Build:
Build:
832 RELEVANT LINES 804 COVERED LINES
0.97 HITS PER LINE
Source Files on main
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Coverage ∆ File Lines Relevant Covered Missed Hits/Line

Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
7372649128 main Use per-element ML models for local descriptors (#39) * Implement a per-element version of SOAP * Ensuring matrices are on same devices * Scale scaling constants by number of atoms * Use per-atom scaling in train, add patience to trainin... push 31 Dec 2023 08:52PM UTC web-flow github
96.63
7315942373 main Add ability to run ExaChem (#38) * Make the code an optional argument * Add a config for local * Support passing arguments for ExaChem push 24 Dec 2023 05:27PM UTC web-flow github
96.68
7200694506 main Add function which returns the MVN (#37) push 13 Dec 2023 08:34PM UTC web-flow github
97.51
7199024258 main Merge branch 'main' of github.com:globus-labs/faster-molecular-hessians into main push 13 Dec 2023 05:48PM UTC WardLT github
97.48
7174106740 main Add CLI support for approximate Hessians (#35) * Add initial sampler We'll probably use it in our bigger tests anyway * Initial draft of the static thinker * Finish CLI support * Make a log statement less verbose push 11 Dec 2023 10:28PM UTC web-flow github
97.48
7169611409 main Add a simple sampling strategy (#34) No rotations or other nonesense. Just bump each atom push 11 Dec 2023 03:29PM UTC web-flow github
97.28
7141968343 main Add support for radicals (#33) * Add support for radicals * Add missing test file * Fix calculation for required computations * Use methyl radical for tests * Remove outputs push 08 Dec 2023 01:37PM UTC web-flow github
97.25
7133470525 main Test deployment on Theta (#32) * Switch to more compact message, drop calculator * Add Parsl configurations * Make sure ASE settings get propagated to workers * Use semaphore for initial energy push 07 Dec 2023 08:14PM UTC web-flow github
97.2
7130394642 main Add ability to deploy on HPC (#31) * Send whole atoms record back * Run ASE inside a temporary directory Avoid calcualtions from intefering with each other * Test with >1 worker * Add option for loading parsl configuration * Name t... push 07 Dec 2023 03:35PM UTC web-flow github
97.19
7119656703 main Add a dynamic workflow (#30) * Add the workflow function * Add missing fixture * Add a workflow for exact computations * Compute the Hessian with numerical diff * Use that the matrix is symmetric * Add a CLI push 06 Dec 2023 08:08PM UTC web-flow github
97.17
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